PostProcessingWriter Class Reference

#include <PostProcessingWriter.hpp>

Collaboration diagram for PostProcessingWriter:

[legend]

List of all members.

Public Member Functions
	PostProcessingWriter (Hdf5DataReader *pDataReader)
	~PostProcessingWriter ()
Private Member Functions
void	WriteApdMapFile (double threshold, double repolarisationPercentage)
void	WriteUpstrokeTimeMap (double threshold)
void	WriteMaxUpstrokeVelocityMap (double threshold)
void	WriteConductionVelocityMap (unsigned originNode, std::vector< double > distancesFromOriginNode)
Private Attributes
PropagationPropertiesCalculator *	mpCalculator
unsigned	mNumberOfNodes
Friends
class	TestPostProcessingWriter

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Detailed Description

Write out physiological parameters at the end of a simulation

• APD map
• Upstroke time map

Todo:

• Needs to deal with the case where no upstroke is found.

Definition at line 43 of file PostProcessingWriter.hpp.

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Constructor & Destructor Documentation

PostProcessingWriter::PostProcessingWriter

(

Hdf5DataReader *

pDataReader

)

Constructor

Parameters:

pDataReader

an HDF5 reader from which to build the PropagationPropertiesCalculator

Definition at line 36 of file PostProcessingWriter.cpp.

References Hdf5DataReader::GetNumberOfRows(), mNumberOfNodes, and mpCalculator.

PostProcessingWriter::~PostProcessingWriter

(

)

Destructor

Definition at line 42 of file PostProcessingWriter.cpp.

References mpCalculator.

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Member Function Documentation

void PostProcessingWriter::WriteApdMapFile	(	double	threshold,
		double	repolarisationPercentage
	)			[private]

Method for opening an APD map file and writing one row per node line 1: <first APD for node 0> <second APD for node 0> ... line 2: <first APD for node 1> <second APD for node 1> ... etc.

Nodes where there is no APD are respresented by a single 0

Parameters:

	threshold	- Vm used to signify the upstroke (mV)
	repolarisationPercentage	eg. 90.0 for APD90

Definition at line 48 of file PostProcessingWriter.cpp.

References PetscTools::AmMaster(), PropagationPropertiesCalculator::CalculateAllActionPotentialDurations(), HeartConfig::Instance(), mNumberOfNodes, mpCalculator, and OutputFileHandler::OpenOutputFile().

void PostProcessingWriter::WriteUpstrokeTimeMap

(

double

threshold

)

[private]

Write out times of each upstroke for each node:

line 1: <first upstroke time for node 0> <second upstroke time for node 0> ... line 2: <first upstroke time for node 1> <second upstroke time for node 1> ... etc.

If there is no upstroke then there will a ... ///

Todo:

Allow this (see class description)

Parameters:

threshold

- Vm used to signify the upstroke (mV)

Todo:

Allow this (see class description)

Definition at line 81 of file PostProcessingWriter.cpp.

References PetscTools::AmMaster(), PropagationPropertiesCalculator::CalculateUpstrokeTimes(), HeartConfig::Instance(), mNumberOfNodes, mpCalculator, and OutputFileHandler::OpenOutputFile().

void PostProcessingWriter::WriteMaxUpstrokeVelocityMap

(

double

threshold

)

[private]

Write out velocities of each max upstroke for each node:

line 1: <first upstroke velocity for node 0> <second upstroke velocity for node 0> ... line 2: <first upstroke velocity for node 1> <second upstroke velocity for node 1> ... etc.

If there is no upstroke then there will a ... ///

Todo:

Allow this (see class description)

Parameters:

threshold

- Vm used to signify the upstroke (mV)

Todo:

Allow this (see class description)

Definition at line 103 of file PostProcessingWriter.cpp.

References PetscTools::AmMaster(), PropagationPropertiesCalculator::CalculateAllMaximumUpstrokeVelocities(), HeartConfig::Instance(), mNumberOfNodes, mpCalculator, and OutputFileHandler::OpenOutputFile().

void PostProcessingWriter::WriteConductionVelocityMap	(	unsigned	originNode,
		std::vector< double >	distancesFromOriginNode
	)			[private]

Write out conduction velocity map from the given node the rest of the mesh:

line 1: <conduction velocity for node 0 and AP 0> <conduction velocity for node 0 and AP 1> ... line 2: <conduction velocity for node 1 and AP 0> <conduction velocity for node 1 and AP 1> ... etc.

Note: the line corresponding to node number originNode will contain ...

Parameters:

	originNode	- Node to compute the conduction velocity from
	distancesFromOriginNode	- Distance map from originNode to all the nodes in the simulation. Tipically calculated with DistanceMapCalculator

Definition at line 125 of file PostProcessingWriter.cpp.

References PetscTools::AmMaster(), PropagationPropertiesCalculator::CalculateAllConductionVelocities(), HeartConfig::Instance(), mNumberOfNodes, mpCalculator, and OutputFileHandler::OpenOutputFile().

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Member Data Documentation

PropagationPropertiesCalculator* PostProcessingWriter::mpCalculator [private]

PropagationPropertiesCalculator based on HDF5 data reader

Definition at line 48 of file PostProcessingWriter.hpp.

Referenced by PostProcessingWriter(), WriteApdMapFile(), WriteConductionVelocityMap(), WriteMaxUpstrokeVelocityMap(), WriteUpstrokeTimeMap(), and ~PostProcessingWriter().

unsigned PostProcessingWriter::mNumberOfNodes [private]

Number of nodes in the mesh (got from the data reader)

Definition at line 49 of file PostProcessingWriter.hpp.

Referenced by PostProcessingWriter(), WriteApdMapFile(), WriteConductionVelocityMap(), WriteMaxUpstrokeVelocityMap(), and WriteUpstrokeTimeMap().

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The documentation for this class was generated from the following files:

• /tmp/release_1.1/heart/src/postprocessing/PostProcessingWriter.hpp
• /tmp/release_1.1/heart/src/postprocessing/PostProcessingWriter.cpp