Hdf5ToMeshalyzerConverter Class Reference

#include <Hdf5ToMeshalyzerConverter.hpp>

Collaboration diagram for Hdf5ToMeshalyzerConverter:

[legend]

List of all members.

Public Member Functions
	Hdf5ToMeshalyzerConverter (std::string inputDirectory, std::string outputDirectory, std::string fileBaseName)
Private Member Functions
void	Write (std::string type)
Private Attributes
Hdf5DataReader *	mpReader
std::string	mOutputDirectory
std::string	mFileBaseName

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Detailed Description

This class converts from Hdf5 format to meshalyzer format, ie, for voltage, one file, which looks like

V_node_0_time_0 .. V_node_N_time_0 V_node_0_time_1 .. V_node_N_time_1 V_node_0_time_2 .. V_node_N_time_M

The files that are written are <base_name>_V.dat or <base_name>_Phi_e.dat, where <base_name> is the base name of the original .h5 file. The new files are written in the same directory as the .h5 file. All paths are relative to the CHASTE_TEST_OUTPUT directory.

Definition at line 54 of file Hdf5ToMeshalyzerConverter.hpp.

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Constructor & Destructor Documentation

Hdf5ToMeshalyzerConverter::Hdf5ToMeshalyzerConverter	(	std::string	inputDirectory,
		std::string	outputDirectory,
		std::string	fileBaseName
	)

Constructor, which does the conversion.

Parameters:

	inputDirectory	The input directory, relative to CHASTE_TEST_OUTPUT, where the .h5 file has been written
	outputDirectory	The output directory, relative to CHASTE_TEST_OUTPUT, where the output will be placed
	fileBaseName	The base name of the data file.

Definition at line 88 of file Hdf5ToMeshalyzerConverter.cpp.

References PetscTools::AmMaster(), OutputFileHandler::OpenOutputFile(), and Write().

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Member Function Documentation

void Hdf5ToMeshalyzerConverter::Write

(

std::string

type

)

[private]

A helper method which takes in a string, which must be 'V' or 'Phi_e' and reads the data corresponding to that string, writing it out in meshalyzer format.

Definition at line 41 of file Hdf5ToMeshalyzerConverter.cpp.

References PetscTools::AmMaster(), DistributedVector::CreateVec(), DistributedVector::GetProblemSize(), OutputFileHandler::OpenOutputFile(), and DistributedVector::SetProblemSize().

Referenced by Hdf5ToMeshalyzerConverter().

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The documentation for this class was generated from the following files:

• /tmp/release_1/heart/src/problem/Hdf5ToMeshalyzerConverter.hpp
• /tmp/release_1/heart/src/problem/Hdf5ToMeshalyzerConverter.cpp