TissueSimulationArchiver< DIM, SIM > Class Template Reference

#include <TissueSimulationArchiver.hpp>

List of all members.

Static Public Member Functions
static SIM *	Load (const std::string &rArchiveDirectory, const double &rTimeStamp)
static void	Save (SIM *pSim)
Static Private Member Functions
static std::string	GetArchivePathname (const std::string &rArchiveDirectory, const double &rTimeStamp)

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Detailed Description

template<unsigned DIM, class SIM>
class TissueSimulationArchiver< DIM, SIM >

TissueSimulationArchiver handles the checkpointing (saving and loading) of all the various TissueSimulation objects. It has no explicit constructor (just uses a default one) and no member variables.

Definition at line 53 of file TissueSimulationArchiver.hpp.

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Member Function Documentation

template<unsigned DIM, class SIM>

SIM * TissueSimulationArchiver< DIM, SIM >::Load	(	const std::string &	rArchiveDirectory,
		const double &	rTimeStamp
	)			[inline, static]

Loads a saved tissue simulation to run further.

Parameters:

	rArchiveDirectory	the name of the simulation to load (specified originally by simulation.SetOutputDirectory("wherever"); )
	rTimeStamp	the time at which to load the simulation (this must be one of the times at which simulation.Save() was called)

Definition at line 117 of file TissueSimulationArchiver.hpp.

References TissueSimulationArchiver< DIM, SIM >::GetArchivePathname(), CellwiseData< DIM >::Instance(), WntConcentration::Instance(), SimulationTime::Instance(), and SimulationTime::IsStartTimeSetUp().

template<unsigned DIM, class SIM>

void TissueSimulationArchiver< DIM, SIM >::Save

(

SIM *

pSim

)

[inline, static]

Saves the whole tissue simulation for restarting later.

Puts it in the archive folder under the simulation's OutputDirectory, in the file "tissue_sim_at_time_<SIMULATION TIME>.arch". The mesh is written to files in the same folder.

First archives simulation time (and other singletons, if used) then the simulation itself.

Parameters:

pSim

pointer to the simulation

Definition at line 155 of file TissueSimulationArchiver.hpp.

References OutputFileHandler::GetOutputDirectoryFullPath(), SimulationTime::GetTime(), CellwiseData< DIM >::Instance(), WntConcentration::Instance(), SimulationTime::Instance(), CellwiseData< DIM >::IsSetUp(), SimulationTime::IsStartTimeSetUp(), and WntConcentration::IsWntSetUp().

template<unsigned DIM, class SIM>

std::string TissueSimulationArchiver< DIM, SIM >::GetArchivePathname	(	const std::string &	rArchiveDirectory,
		const double &	rTimeStamp
	)			[inline, static, private]

Find the right archive (and mesh) to load. The files are contained within the 'archive' folder in rArchiveDirectory, with the archive itself called 'tissue_sim_at_time_`rTimeStamp`.arch'. The path to this file is returned.

The path to the mesh is stored as MeshArchiveInfo::meshPathname for use by the Tissue de-serialization routines.

Parameters:

	rArchiveDirectory	the name of the simulation to load (specified originally by simulation.SetOutputDirectory("wherever"); )
	rTimeStamp	the time at which to load the simulation (this must be one of the times at which simulation.Save() was called)

Definition at line 101 of file TissueSimulationArchiver.hpp.

References OutputFileHandler::GetChasteTestOutputDirectory(), and MeshArchiveInfo::meshPathname.

Referenced by TissueSimulationArchiver< DIM, SIM >::Load().

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The documentation for this class was generated from the following file:

• /tmp/release_1/cancer/src/tissue/TissueSimulationArchiver.hpp