AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM > Class Template Reference

#include <AbstractHdf5Converter.hpp>

Inherited by Hdf5ToCmguiConverter< ELEMENT_DIM, SPACE_DIM > [private], Hdf5ToMeshalyzerConverter< ELEMENT_DIM, SPACE_DIM > [private], and Hdf5ToVtkConverter< ELEMENT_DIM, SPACE_DIM > [private].

Collaboration diagram for AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >:
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List of all members.

Public Member Functions

 AbstractHdf5Converter (std::string inputDirectory, std::string fileBaseName, AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh, std::string subdirectoryName)
 ~AbstractHdf5Converter ()

Protected Attributes

Hdf5DataReader * mpReader
unsigned mNumVariables
std::string mFileBaseName
AbstractTetrahedralMesh
< ELEMENT_DIM, SPACE_DIM > * 		mpMesh
OutputFileHandler * mpOutputFileHandler

Detailed Description

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
class AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >

This derived children of this class convert from Hdf5 format to a range of other formats for postprocessing

Definition at line 42 of file AbstractHdf5Converter.hpp.

Constructor & Destructor Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::AbstractHdf5Converter ( std::string  inputDirectory,
std::string  fileBaseName,
AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *  pMesh,
std::string  subdirectoryName 
) [inline]

Constructor, which does the conversion and writes the .info file.

Note:
This method is collective, and must be called by al processes.
Parameters:
inputDirectory The input directory, relative to CHASTE_TEST_OUTPUT, where the .h5 file has been written
fileBaseName The base name of the data file.
pMesh Pointer to the mesh.
subdirectoryName name for the output directory to be created (relative to HeartConfig::Instance()->GetOutputDirectory())

Definition at line 36 of file AbstractHdf5Converter.cpp.

References PetscTools::AmMaster(), Hdf5DataReader::GetNumberOfRows(), HeartConfig::GetPrintingTimeStep(), ChasteBuildInfo::GetProvenanceString(), Hdf5DataReader::GetUnlimitedDimensionValues(), Hdf5DataReader::GetVariableNames(), HeartConfig::Instance(), AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::mFileBaseName, AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::mNumVariables, AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::mpMesh, AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::mpOutputFileHandler, AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::mpReader, OutputFileHandler::OpenOutputFile(), and HeartConfig::Write().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::~AbstractHdf5Converter (  )  [inline]

Destructor

Definition at line 107 of file AbstractHdf5Converter.cpp.

References AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::mpOutputFileHandler, and AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::mpReader.

Member Data Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
std::string AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::mFileBaseName [protected]

Base name for the files [basename].vtu, [basename].dat etc.

Definition at line 47 of file AbstractHdf5Converter.hpp.

Referenced by AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::AbstractHdf5Converter(), Hdf5ToMeshalyzerConverter< ELEMENT_DIM, SPACE_DIM >::Write(), and Hdf5ToCmguiConverter< ELEMENT_DIM, SPACE_DIM >::Write().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
unsigned AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::mNumVariables [protected]

Read from the reader -- ought to be 1 (mono) or 2 (bi)

Definition at line 46 of file AbstractHdf5Converter.hpp.

Referenced by AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::AbstractHdf5Converter(), Hdf5ToCmguiConverter< ELEMENT_DIM, SPACE_DIM >::Hdf5ToCmguiConverter(), Hdf5ToMeshalyzerConverter< ELEMENT_DIM, SPACE_DIM >::Hdf5ToMeshalyzerConverter(), and Hdf5ToVtkConverter< ELEMENT_DIM, SPACE_DIM >::Hdf5ToVtkConverter().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
AbstractTetrahedralMesh<ELEMENT_DIM,SPACE_DIM>* AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::mpMesh [protected]

Pointer to the mesh.

Definition at line 48 of file AbstractHdf5Converter.hpp.

Referenced by AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::AbstractHdf5Converter(), Hdf5ToCmguiConverter< ELEMENT_DIM, SPACE_DIM >::Hdf5ToCmguiConverter(), Hdf5ToMeshalyzerConverter< ELEMENT_DIM, SPACE_DIM >::Hdf5ToMeshalyzerConverter(), and Hdf5ToVtkConverter< ELEMENT_DIM, SPACE_DIM >::Hdf5ToVtkConverter().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
OutputFileHandler* AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::mpOutputFileHandler [protected]

Intialised as directory in whicht to store the results

Definition at line 49 of file AbstractHdf5Converter.hpp.

Referenced by AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::AbstractHdf5Converter(), Hdf5ToMeshalyzerConverter< ELEMENT_DIM, SPACE_DIM >::Write(), Hdf5ToCmguiConverter< ELEMENT_DIM, SPACE_DIM >::Write(), and AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::~AbstractHdf5Converter().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
Hdf5DataReader* AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::mpReader [protected]

Pointer to reader of the file to be converted

Definition at line 45 of file AbstractHdf5Converter.hpp.

Referenced by AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::AbstractHdf5Converter(), Hdf5ToVtkConverter< ELEMENT_DIM, SPACE_DIM >::Hdf5ToVtkConverter(), Hdf5ToMeshalyzerConverter< ELEMENT_DIM, SPACE_DIM >::Write(), Hdf5ToCmguiConverter< ELEMENT_DIM, SPACE_DIM >::Write(), and AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::~AbstractHdf5Converter().

The documentation for this class was generated from the following files:
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