AbstractOdeSystemInformation Class Reference

#include <AbstractOdeSystemInformation.hpp>

Inherited by CellwiseOdeSystemInformation< ODE_SYSTEM >, CombinedOdeSystemInformation, and OdeSystemInformation< ODE_SYSTEM >.

Collaboration diagram for AbstractOdeSystemInformation:

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List of all members.

Public Member Functions
	AbstractOdeSystemInformation ()
virtual	~AbstractOdeSystemInformation ()
void	SetInitialConditions (const std::vector< double > &rInitialConditions)
void	SetInitialConditionsComponent (unsigned index, double initialCondition) throw (std::out_of_range)
std::vector< double >	GetInitialConditions () const
const std::vector< std::string > &	rGetVariableNames () const
const std::vector< std::string > &	rGetVariableUnits () const
unsigned	GetStateVariableNumberByName (const std::string &rName) const
std::string	GetStateVariableUnitsByNumber (unsigned varNumber) const
const std::vector< std::string > &	rGetParameterNames () const
const std::vector< std::string > &	rGetParameterUnits () const
Protected Member Functions
virtual void	Initialise ()=0
Protected Attributes
std::vector< std::string >	mVariableNames
std::vector< std::string >	mVariableUnits
std::vector< std::string >	mParameterNames
std::vector< std::string >	mParameterUnits
std::vector< double >	mInitialConditions
bool	mInitialised

Detailed Description

An abstract class which provides access to information about a particular ODE system *class* (as opposed to an instance).

The information available includes:

names of state variables
units of state variables
suggested initial conditions

This class requires a subclass defining the Initialise method in order to set up the information. Developers may do this by defining their own subclass, but the most convenient method is likely to be to use the OdeSystemInformation class, which is a templated singleton subclass of this AbstractOdeSystemInformation class. See its documentation for details of how to use it.

Definition at line 52 of file AbstractOdeSystemInformation.hpp.

Constructor & Destructor Documentation

AbstractOdeSystemInformation::AbstractOdeSystemInformation ( )

Constructor.

Definition at line 35 of file AbstractOdeSystemInformation.cpp.

AbstractOdeSystemInformation::~AbstractOdeSystemInformation ( ) [virtual]

Virtual destructor since we have virtual methods.

Definition at line 40 of file AbstractOdeSystemInformation.cpp.

Member Function Documentation

std::vector< double > AbstractOdeSystemInformation::GetInitialConditions ( ) const

Get a copy of the suggested initial conditions.

Definition at line 56 of file AbstractOdeSystemInformation.cpp.

References mInitialConditions, and mInitialised.

unsigned AbstractOdeSystemInformation::GetStateVariableNumberByName ( const std::string & rName ) const

This method is used to establish a state varible's position within the vector of state variables of an ODE system. This number can then be used with the method GetStateVariableUnitsByNumber.

Parameters:

rName

the name of a state variable

Returns:: the state variable's position within the vector of state variables associated with the ODE system.

Definition at line 74 of file AbstractOdeSystemInformation.cpp.

References mInitialised, and mVariableNames.

std::string AbstractOdeSystemInformation::GetStateVariableUnitsByNumber ( unsigned varNumber ) const

Get the units of a state variable given its index in the ODE system.

Parameters:

varNumber

a state variable's position within the vector of state variables associated with the ODE system.

Returns:: the units of the state variable.

Definition at line 87 of file AbstractOdeSystemInformation.cpp.

References mInitialised, and mVariableUnits.

virtual void AbstractOdeSystemInformation::Initialise ( ) [protected, pure virtual]

Initialise the ODE system information.

This must be provided by subclasses.

const std::vector< std::string > & AbstractOdeSystemInformation::rGetParameterNames ( ) const

Get the vector of parameter names.

Definition at line 94 of file AbstractOdeSystemInformation.cpp.

References mInitialised, and mParameterNames.

const std::vector< std::string > & AbstractOdeSystemInformation::rGetParameterUnits ( ) const

Get the vector of parameter units.

Definition at line 100 of file AbstractOdeSystemInformation.cpp.

References mInitialised, and mParameterUnits.

const std::vector< std::string > & AbstractOdeSystemInformation::rGetVariableNames ( ) const

Get the variable names vector.

Definition at line 62 of file AbstractOdeSystemInformation.cpp.

References mInitialised, and mVariableNames.

const std::vector< std::string > & AbstractOdeSystemInformation::rGetVariableUnits ( ) const

Get the variable units vector.

Definition at line 68 of file AbstractOdeSystemInformation.cpp.

References mInitialised, and mVariableUnits.

void AbstractOdeSystemInformation::SetInitialConditions ( const std::vector< double > & rInitialConditions )

Set the suggested initial conditions to use.

Parameters:

rInitialConditions

vector containing initial values for the state variables

Definition at line 44 of file AbstractOdeSystemInformation.cpp.

References mInitialConditions, and mInitialised.

void AbstractOdeSystemInformation::SetInitialConditionsComponent	(	unsigned	index,
		double	initialCondition
	)			throw (std::out_of_range)

Set a single component of the suggested initial conditions to use.

Parameters:

	index	the index of the state variable in the system
	initialCondition	the initial value for the state variable

Definition at line 50 of file AbstractOdeSystemInformation.cpp.

Member Data Documentation

std::vector<double> AbstractOdeSystemInformation::mInitialConditions [protected]

Suggested initial conditions

Definition at line 69 of file AbstractOdeSystemInformation.hpp.

Referenced by CombinedOdeSystemInformation::CombinedOdeSystemInformation(), GetInitialConditions(), OdeSystemInformation< ODE_SYSTEM >::Initialise(), CellwiseOdeSystemInformation< ODE_SYSTEM >::Initialise(), and SetInitialConditions().

bool AbstractOdeSystemInformation::mInitialised [protected]

Whether a 'real' Initialise method has been called

Definition at line 72 of file AbstractOdeSystemInformation.hpp.

Referenced by CombinedOdeSystemInformation::CombinedOdeSystemInformation(), GetInitialConditions(), GetStateVariableNumberByName(), GetStateVariableUnitsByNumber(), OdeSystemInformation< ODE_SYSTEM >::Initialise(), CellwiseOdeSystemInformation< ODE_SYSTEM >::Initialise(), rGetParameterNames(), rGetParameterUnits(), rGetVariableNames(), rGetVariableUnits(), and SetInitialConditions().

std::vector<std::string> AbstractOdeSystemInformation::mParameterNames [protected]

Parameter names

Definition at line 63 of file AbstractOdeSystemInformation.hpp.

Referenced by rGetParameterNames().

std::vector<std::string> AbstractOdeSystemInformation::mParameterUnits [protected]

Parameter units

Definition at line 66 of file AbstractOdeSystemInformation.hpp.

Referenced by rGetParameterUnits().

std::vector<std::string> AbstractOdeSystemInformation::mVariableNames [protected]

State variable names

Definition at line 57 of file AbstractOdeSystemInformation.hpp.

Referenced by CombinedOdeSystemInformation::CombinedOdeSystemInformation(), GetStateVariableNumberByName(), OdeSystemInformation< ODE_SYSTEM >::Initialise(), CellwiseOdeSystemInformation< ODE_SYSTEM >::Initialise(), and rGetVariableNames().

std::vector<std::string> AbstractOdeSystemInformation::mVariableUnits [protected]

State variable units

Definition at line 60 of file AbstractOdeSystemInformation.hpp.

Referenced by CombinedOdeSystemInformation::CombinedOdeSystemInformation(), GetStateVariableUnitsByNumber(), OdeSystemInformation< ODE_SYSTEM >::Initialise(), CellwiseOdeSystemInformation< ODE_SYSTEM >::Initialise(), and rGetVariableUnits().

The documentation for this class was generated from the following files:

/tmp/release_2.0/ode/src/common/AbstractOdeSystemInformation.hpp
/tmp/release_2.0/ode/src/common/AbstractOdeSystemInformation.cpp

AbstractOdeSystemInformation Class Reference

Public Member Functions

Protected Member Functions

Protected Attributes

Detailed Description

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation