AbstractCvodeCell Member List

This is the complete list of members for AbstractCvodeCell, including all inherited members.

AbstractCardiacCellInterface(boost::shared_ptr< AbstractIvpOdeSolver > pOdeSolver, unsigned voltageIndex, boost::shared_ptr< AbstractStimulusFunction > pIntracellularStimulus)AbstractCardiacCellInterface
AbstractCvodeCell(boost::shared_ptr< AbstractIvpOdeSolver > pSolver, unsigned numberOfStateVariables, unsigned voltageIndex, boost::shared_ptr< AbstractStimulusFunction > pIntracellularStimulus)AbstractCvodeCell
AbstractParameterisedSystem(unsigned numberOfStateVariables)AbstractParameterisedSystem< N_Vector >
boost::serialization::access classAbstractCardiacCellInterface [friend]
Compute(double tStart, double tEnd, double tSamp=0.0)AbstractCvodeCell [virtual]
ComputeDerivedQuantities(double time, const N_Vector &rState)AbstractParameterisedSystem< N_Vector > [virtual]
ComputeDerivedQuantitiesFromCurrentState(double time)AbstractParameterisedSystem< N_Vector >
ComputeExceptVoltage(double tStart, double tEnd)AbstractCvodeCell [virtual]
CopyVector(N_Vector originalVec)AbstractCvodeCell [protected]
CvodeError(int flag, const char *msg)AbstractCvodeCell [private]
DumpState(const std::string &rMessage, N_Vector Y=NULL)AbstractCvodeCell [protected]
EvaluateRhs(realtype t, N_Vector y, N_Vector ydot)=0AbstractCvodeCell [pure virtual]
FreeCvodeMemory()AbstractCvodeCell [private]
GetAbsoluteTolerance()AbstractCvodeCell
GetAnyVariable(unsigned index, double time=0.0, N_Vector *pDerivedQuantities=NULL)AbstractParameterisedSystem< N_Vector >
GetAnyVariableIndex(const std::string &rName) const AbstractParameterisedSystem< N_Vector >
GetAnyVariableUnits(unsigned index) const AbstractParameterisedSystem< N_Vector >
GetDerivedQuantityIndex(const std::string &rName) const AbstractParameterisedSystem< N_Vector >
GetDerivedQuantityUnits(unsigned index) const AbstractParameterisedSystem< N_Vector >
GetIIonic()=0AbstractCardiacCellInterface [pure virtual]
GetInitialConditions()AbstractCvodeCell
GetIntracellularAreaStimulus(double time)AbstractCardiacCellInterface
GetIntracellularStimulus(double time)AbstractCardiacCellInterface
GetLastStepSize()AbstractCvodeCell
GetMaxSteps()AbstractCvodeCell
GetNumberOfDerivedQuantities() const AbstractParameterisedSystem< N_Vector >
GetNumberOfParameters() const AbstractParameterisedSystem< N_Vector >
GetNumberOfStateVariables() const AbstractParameterisedSystem< N_Vector >
GetParameter(unsigned index) const AbstractParameterisedSystem< N_Vector >
GetParameterIndex(const std::string &rName) const AbstractParameterisedSystem< N_Vector >
GetParameterUnits(unsigned index) const AbstractParameterisedSystem< N_Vector >
GetRelativeTolerance()AbstractCvodeCell
GetSolver() const AbstractCardiacCellInterface
GetStateVariable(unsigned index) const AbstractParameterisedSystem< N_Vector >
GetStateVariableIndex(const std::string &rName) const AbstractParameterisedSystem< N_Vector >
GetStateVariables()AbstractCvodeCell
GetStateVariableUnits(unsigned index) const AbstractParameterisedSystem< N_Vector >
GetStimulus(double time)AbstractCardiacCellInterface
GetStimulusFunction()AbstractCardiacCellInterface
GetStimulusFunction() const AbstractCardiacCellInterface
GetSystemInformation() const AbstractParameterisedSystem< N_Vector >
GetSystemName() const AbstractParameterisedSystem< N_Vector >
GetVoltage()AbstractCvodeCell [virtual]
GetVoltageIndex()AbstractCardiacCellInterface
HasCellMLDefaultStimulus()AbstractCardiacCellInterface
Init()AbstractCvodeCell [protected]
mAbsTolAbstractCvodeCell [protected]
MakeStdVec(N_Vector v)AbstractCvodeCell [private]
mHasDefaultStimulusFromCellMLAbstractCardiacCellInterface [protected]
mIsUsedInTissueAbstractCardiacCellInterface [protected]
mLastInternalStepSizeAbstractCvodeCell [protected]
mMaxStepsAbstractCvodeCell [protected]
mNumberOfStateVariablesAbstractParameterisedSystem< N_Vector > [protected]
mParametersAbstractParameterisedSystem< N_Vector > [protected]
mpCvodeMemAbstractCvodeCell [protected]
mpIntracellularStimulusAbstractCardiacCellInterface [protected]
mpOdeSolverAbstractCardiacCellInterface [protected]
mpSystemInfoAbstractParameterisedSystem< N_Vector > [protected]
mRelTolAbstractCvodeCell [protected]
mSetVoltageDerivativeToZeroAbstractCardiacCellInterface [protected]
mStateVariablesAbstractParameterisedSystem< N_Vector > [protected]
mVoltageIndexAbstractCardiacCellInterface [protected]
ResetToInitialConditions()AbstractCvodeCell [virtual]
rGetDerivedQuantityNames() const AbstractParameterisedSystem< N_Vector >
rGetDerivedQuantityUnits() const AbstractParameterisedSystem< N_Vector >
rGetParameterNames() const AbstractParameterisedSystem< N_Vector >
rGetParameterUnits() const AbstractParameterisedSystem< N_Vector >
rGetStateVariableNames() const AbstractParameterisedSystem< N_Vector >
rGetStateVariables()AbstractParameterisedSystem< N_Vector >
rGetStateVariableUnits() const AbstractParameterisedSystem< N_Vector >
SetIntracellularStimulusFunction(boost::shared_ptr< AbstractStimulusFunction > pStimulus)AbstractCardiacCellInterface
SetMaxSteps(long int numSteps)AbstractCvodeCell
SetParameter(const std::string &rName, double value)AbstractParameterisedSystem< N_Vector >
SetParameter(unsigned index, double value)AbstractParameterisedSystem< N_Vector >
SetStateVariable(unsigned index, double newValue)AbstractParameterisedSystem< N_Vector >
SetStateVariables(N_Vector stateVars)AbstractCvodeCell
SetStateVariablesUsingACopyOfThisVector(N_Vector stateVars)AbstractCvodeCell
SetStimulusFunction(boost::shared_ptr< AbstractStimulusFunction > pStimulus)AbstractCardiacCellInterface
SetTolerances(double relTol=1e-4, double absTol=1e-6)AbstractCvodeCell
SetupCvode(N_Vector initialConditions, realtype tStart, realtype maxDt)AbstractCvodeCell [private]
SetUsedInTissueSimulation(bool tissue=true)AbstractCardiacCellInterface
SetVoltage(double voltage)AbstractCvodeCell [virtual]
SetVoltageDerivativeToZero(bool clamp=true)AbstractCvodeCell
Solve(realtype tStart, realtype tEnd, realtype maxDt, realtype tSamp)AbstractCvodeCell
Solve(realtype tStart, realtype tEnd, realtype maxDt)AbstractCvodeCell
UseCellMLDefaultStimulus()AbstractCardiacCellInterface [virtual]
VerifyStateVariables()AbstractCardiacCellInterface [inline, virtual]
~AbstractCardiacCellInterface()AbstractCardiacCellInterface [virtual]
~AbstractCvodeCell()AbstractCvodeCell [virtual]
~AbstractParameterisedSystem()AbstractParameterisedSystem< N_Vector > [virtual]


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