| cell_based/src/common/Identifiable.cpp [code] | |
| cell_based/src/common/Identifiable.hpp [code] | |
| cell_based/src/common/SimulationTime.cpp [code] | |
| cell_based/src/common/SimulationTime.hpp [code] | |
| cell_based/src/fortests/AbstractCellBasedTestSuite.hpp [code] | |
| cell_based/src/fortests/CheckReadyToDivideAndPhaseIsUpdated.hpp [code] | |
| cell_based/src/mesh/Cylindrical2dMesh.cpp [code] | |
| cell_based/src/mesh/Cylindrical2dMesh.hpp [code] | |
| cell_based/src/mesh/Cylindrical2dVertexMesh.cpp [code] | |
| cell_based/src/mesh/Cylindrical2dVertexMesh.hpp [code] | |
| cell_based/src/mesh/CylindricalHoneycombVertexMeshGenerator.cpp [code] | |
| cell_based/src/mesh/CylindricalHoneycombVertexMeshGenerator.hpp [code] | |
| cell_based/src/mesh/HoneycombMeshGenerator.cpp [code] | |
| cell_based/src/mesh/HoneycombMeshGenerator.hpp [code] | |
| cell_based/src/odes/Alarcon2004OxygenBasedCellCycleOdeSystem.cpp [code] | |
| cell_based/src/odes/Alarcon2004OxygenBasedCellCycleOdeSystem.hpp [code] | |
| cell_based/src/odes/CellwiseOdeSystemInformation.hpp [code] | |
| cell_based/src/odes/TysonNovak2001OdeSystem.cpp [code] | |
| cell_based/src/odes/TysonNovak2001OdeSystem.hpp [code] | |
| cell_based/src/population/AbstractCellPopulation.cpp [code] | |
| cell_based/src/population/AbstractCellPopulation.hpp [code] | |
| cell_based/src/population/AbstractCentreBasedCellPopulation.cpp [code] | |
| cell_based/src/population/AbstractCentreBasedCellPopulation.hpp [code] | |
| cell_based/src/population/CellwiseData.cpp [code] | |
| cell_based/src/population/CellwiseData.hpp [code] | |
| cell_based/src/population/CellwiseDataGradient.cpp [code] | |
| cell_based/src/population/CellwiseDataGradient.hpp [code] | |
| cell_based/src/population/MeshBasedCellPopulation.cpp [code] | |
| cell_based/src/population/MeshBasedCellPopulation.hpp [code] | |
| cell_based/src/population/MeshBasedCellPopulationWithGhostNodes.cpp [code] | |
| cell_based/src/population/MeshBasedCellPopulationWithGhostNodes.hpp [code] | |
| cell_based/src/population/NodeBasedCellPopulation.cpp [code] | |
| cell_based/src/population/NodeBasedCellPopulation.hpp [code] | |
| cell_based/src/population/VertexBasedCellPopulation.cpp [code] | |
| cell_based/src/population/VertexBasedCellPopulation.hpp [code] | |
| cell_based/src/population/cell/Cell.cpp [code] | |
| cell_based/src/population/cell/Cell.hpp [code] | |
| cell_based/src/population/cell/CellProliferativeTypes.hpp [code] | |
| cell_based/src/population/cell/CellsGenerator.hpp [code] | |
| cell_based/src/population/cell/cycle/AbstractCellCycleModel.cpp [code] | |
| cell_based/src/population/cell/cycle/AbstractCellCycleModel.hpp [code] | |
| cell_based/src/population/cell/cycle/AbstractCellCycleModelOdeSolver.cpp [code] | |
| cell_based/src/population/cell/cycle/AbstractCellCycleModelOdeSolver.hpp [code] | |
| cell_based/src/population/cell/cycle/AbstractOdeBasedCellCycleModel.cpp [code] | |
| cell_based/src/population/cell/cycle/AbstractOdeBasedCellCycleModel.hpp [code] | |
| cell_based/src/population/cell/cycle/AbstractSimpleCellCycleModel.cpp [code] | |
| cell_based/src/population/cell/cycle/AbstractSimpleCellCycleModel.hpp [code] | |
| cell_based/src/population/cell/cycle/AbstractSimpleGenerationBasedCellCycleModel.cpp [code] | |
| cell_based/src/population/cell/cycle/AbstractSimpleGenerationBasedCellCycleModel.hpp [code] | |
| cell_based/src/population/cell/cycle/Alarcon2004OxygenBasedCellCycleModel.cpp [code] | |
| cell_based/src/population/cell/cycle/Alarcon2004OxygenBasedCellCycleModel.hpp [code] | |
| cell_based/src/population/cell/cycle/CellCycleModelOdeHandler.cpp [code] | |
| cell_based/src/population/cell/cycle/CellCycleModelOdeHandler.hpp [code] | |
| cell_based/src/population/cell/cycle/CellCycleModelOdeSolver.hpp [code] | |
| cell_based/src/population/cell/cycle/CellCycleModelOdeSolverExportWrapper.hpp [code] | |
| cell_based/src/population/cell/cycle/CellCyclePhases.hpp [code] | |
| cell_based/src/population/cell/cycle/FixedDurationGenerationBasedCellCycleModel.cpp [code] | |
| cell_based/src/population/cell/cycle/FixedDurationGenerationBasedCellCycleModel.hpp [code] | |
| cell_based/src/population/cell/cycle/SimpleOxygenBasedCellCycleModel.cpp [code] | |
| cell_based/src/population/cell/cycle/SimpleOxygenBasedCellCycleModel.hpp [code] | |
| cell_based/src/population/cell/cycle/StochasticDurationGenerationBasedCellCycleModel.cpp [code] | |
| cell_based/src/population/cell/cycle/StochasticDurationGenerationBasedCellCycleModel.hpp [code] | |
| cell_based/src/population/cell/cycle/StochasticOxygenBasedCellCycleModel.cpp [code] | |
| cell_based/src/population/cell/cycle/StochasticOxygenBasedCellCycleModel.hpp [code] | |
| cell_based/src/population/cell/cycle/TysonNovakCellCycleModel.cpp [code] | |
| cell_based/src/population/cell/cycle/TysonNovakCellCycleModel.hpp [code] | |
| cell_based/src/population/cell/mutations/AbstractCellMutationState.cpp [code] | |
| cell_based/src/population/cell/mutations/AbstractCellMutationState.hpp [code] | |
| cell_based/src/population/cell/mutations/ApcOneHitCellMutationState.cpp [code] | |
| cell_based/src/population/cell/mutations/ApcOneHitCellMutationState.hpp [code] | |
| cell_based/src/population/cell/mutations/ApcTwoHitCellMutationState.cpp [code] | |
| cell_based/src/population/cell/mutations/ApcTwoHitCellMutationState.hpp [code] | |
| cell_based/src/population/cell/mutations/BetaCateninOneHitCellMutationState.cpp [code] | |
| cell_based/src/population/cell/mutations/BetaCateninOneHitCellMutationState.hpp [code] | |
| cell_based/src/population/cell/mutations/WildTypeCellMutationState.cpp [code] | |
| cell_based/src/population/cell/mutations/WildTypeCellMutationState.hpp [code] | |
| cell_based/src/population/cell/properties/AbstractCellProperty.cpp [code] | |
| cell_based/src/population/cell/properties/AbstractCellProperty.hpp [code] | |
| cell_based/src/population/cell/properties/ApoptoticCellProperty.cpp [code] | |
| cell_based/src/population/cell/properties/ApoptoticCellProperty.hpp [code] | |
| cell_based/src/population/cell/properties/CellLabel.cpp [code] | |
| cell_based/src/population/cell/properties/CellLabel.hpp [code] | |
| cell_based/src/population/cell/properties/CellPropertyCollection.cpp [code] | |
| cell_based/src/population/cell/properties/CellPropertyCollection.hpp [code] | |
| cell_based/src/population/cell/properties/CellPropertyRegistry.cpp [code] | |
| cell_based/src/population/cell/properties/CellPropertyRegistry.hpp [code] | |
| cell_based/src/population/killers/AbstractCellKiller.cpp [code] | |
| cell_based/src/population/killers/AbstractCellKiller.hpp [code] | |
| cell_based/src/population/killers/OxygenBasedCellKiller.cpp [code] | |
| cell_based/src/population/killers/OxygenBasedCellKiller.hpp [code] | |
| cell_based/src/population/killers/RandomCellKiller.cpp [code] | |
| cell_based/src/population/killers/RandomCellKiller.hpp [code] | |
| cell_based/src/population/killers/TargetedCellKiller.cpp [code] | |
| cell_based/src/population/killers/TargetedCellKiller.hpp [code] | |
| cell_based/src/population/mechanics/AbstractForce.cpp [code] | |
| cell_based/src/population/mechanics/AbstractForce.hpp [code] | |
| cell_based/src/population/mechanics/AbstractTwoBodyInteractionForce.cpp [code] | |
| cell_based/src/population/mechanics/AbstractTwoBodyInteractionForce.hpp [code] | |
| cell_based/src/population/mechanics/ChemotacticForce.cpp [code] | |
| cell_based/src/population/mechanics/ChemotacticForce.hpp [code] | |
| cell_based/src/population/mechanics/DiscreteSystemForceCalculator.cpp [code] | |
| cell_based/src/population/mechanics/DiscreteSystemForceCalculator.hpp [code] | |
| cell_based/src/population/mechanics/GeneralisedLinearSpringForce.cpp [code] | |
| cell_based/src/population/mechanics/GeneralisedLinearSpringForce.hpp [code] | |
| cell_based/src/population/mechanics/NagaiHondaForce.cpp [code] | |
| cell_based/src/population/mechanics/NagaiHondaForce.hpp [code] | |
| cell_based/src/population/mechanics/WelikyOsterForce.cpp [code] | |
| cell_based/src/population/mechanics/WelikyOsterForce.hpp [code] | |
| cell_based/src/population/pdes/AveragedSourcePde.cpp [code] | |
| cell_based/src/population/pdes/AveragedSourcePde.hpp [code] | |
| cell_based/src/population/pdes/CellwiseSourcePde.cpp [code] | |
| cell_based/src/population/pdes/CellwiseSourcePde.hpp [code] | |
| cell_based/src/population/pdes/PdeAndBoundaryConditions.cpp [code] | |
| cell_based/src/population/pdes/PdeAndBoundaryConditions.hpp [code] | |
| cell_based/src/population/pdes/SimpleUniformSourcePde.cpp [code] | |
| cell_based/src/population/pdes/SimpleUniformSourcePde.hpp [code] | |
| cell_based/src/simulation/CellBasedSimulation.cpp [code] | |
| cell_based/src/simulation/CellBasedSimulation.hpp [code] | |
| cell_based/src/simulation/CellBasedSimulationArchiver.hpp [code] | |
| cell_based/src/simulation/CellBasedSimulationWithPdes.cpp [code] | |
| cell_based/src/simulation/CellBasedSimulationWithPdes.hpp [code] | |
| cell_based/src/simulation/CellBasedSimulationWithPdesAssembler.cpp [code] | |
| cell_based/src/simulation/CellBasedSimulationWithPdesAssembler.hpp [code] | |
| crypt/src/cell/CryptCellsGenerator.hpp [code] | |
| crypt/src/cell/cycle/AbstractVanLeeuwen2009WntSwatCellCycleModel.cpp [code] | |
| crypt/src/cell/cycle/AbstractVanLeeuwen2009WntSwatCellCycleModel.hpp [code] | |
| crypt/src/cell/cycle/AbstractWntOdeBasedCellCycleModel.cpp [code] | |
| crypt/src/cell/cycle/AbstractWntOdeBasedCellCycleModel.hpp [code] | |
| crypt/src/cell/cycle/SimpleWntCellCycleModel.cpp [code] | |
| crypt/src/cell/cycle/SimpleWntCellCycleModel.hpp [code] | |
| crypt/src/cell/cycle/SingleOdeWntCellCycleModel.cpp [code] | |
| crypt/src/cell/cycle/SingleOdeWntCellCycleModel.hpp [code] | |
| crypt/src/cell/cycle/StochasticWntCellCycleModel.cpp [code] | |
| crypt/src/cell/cycle/StochasticWntCellCycleModel.hpp [code] | |
| crypt/src/cell/cycle/VanLeeuwen2009WntSwatCellCycleModelHypothesisOne.cpp [code] | |
| crypt/src/cell/cycle/VanLeeuwen2009WntSwatCellCycleModelHypothesisOne.hpp [code] | |
| crypt/src/cell/cycle/VanLeeuwen2009WntSwatCellCycleModelHypothesisTwo.cpp [code] | |
| crypt/src/cell/cycle/VanLeeuwen2009WntSwatCellCycleModelHypothesisTwo.hpp [code] | |
| crypt/src/cell/cycle/WntCellCycleModel.cpp [code] | |
| crypt/src/cell/cycle/WntCellCycleModel.hpp [code] | |
| crypt/src/cell/cycle/WntConcentration.cpp [code] | |
| crypt/src/cell/cycle/WntConcentration.hpp [code] | |
| crypt/src/killers/RadialSloughingCellKiller.cpp [code] | |
| crypt/src/killers/RadialSloughingCellKiller.hpp [code] | |
| crypt/src/killers/SloughingCellKiller.cpp [code] | |
| crypt/src/killers/SloughingCellKiller.hpp [code] | |
| crypt/src/mechanics/CryptProjectionForce.cpp [code] | |
| crypt/src/mechanics/CryptProjectionForce.hpp [code] | |
| crypt/src/mechanics/LinearSpringWithVariableSpringConstantsForce.cpp [code] | |
| crypt/src/mechanics/LinearSpringWithVariableSpringConstantsForce.hpp [code] | |
| crypt/src/mechanics/VertexCryptBoundaryForce.cpp [code] | |
| crypt/src/mechanics/VertexCryptBoundaryForce.hpp [code] | |
| crypt/src/odes/Mirams2010WntOdeSystem.cpp [code] | |
| crypt/src/odes/Mirams2010WntOdeSystem.hpp [code] | |
| crypt/src/odes/VanLeeuwen2009WntSwatCellCycleOdeSystem.cpp [code] | |
| crypt/src/odes/VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp [code] | |
| crypt/src/odes/WntCellCycleOdeSystem.cpp [code] | |
| crypt/src/odes/WntCellCycleOdeSystem.hpp [code] | |
| crypt/src/simulation/CryptSimulation1d.cpp [code] | |
| crypt/src/simulation/CryptSimulation1d.hpp [code] | |
| crypt/src/simulation/CryptSimulation2d.cpp [code] | |
| crypt/src/simulation/CryptSimulation2d.hpp [code] | |
| crypt/src/simulation/CryptSimulationArchiver.hpp [code] | |
| crypt/src/simulation/VertexCryptSimulation2d.cpp [code] | |
| crypt/src/simulation/VertexCryptSimulation2d.hpp [code] | |
| crypt/src/statistics/AbstractCryptStatistics.cpp [code] | |
| crypt/src/statistics/AbstractCryptStatistics.hpp [code] | |
| crypt/src/statistics/CryptProjectionStatistics.cpp [code] | |
| crypt/src/statistics/CryptProjectionStatistics.hpp [code] | |
| crypt/src/statistics/CryptStatistics.cpp [code] | |
| crypt/src/statistics/CryptStatistics.hpp [code] | |
| global/src/ChasteBuildRoot.hpp [code] | |
| global/src/CommandLineArguments.cpp [code] | |
| global/src/CommandLineArguments.hpp [code] | |
| global/src/Debug.cpp [code] | |
| global/src/Debug.hpp [code] | |
| global/src/Exception.cpp [code] | |
| global/src/Exception.hpp [code] | |
| global/src/ExecutableSupport.cpp [code] | |
| global/src/ExecutableSupport.hpp [code] | |
| global/src/FileFinder.cpp [code] | |
| global/src/FileFinder.hpp [code] | |
| global/src/GetCurrentWorkingDirectory.cpp [code] | |
| global/src/GetCurrentWorkingDirectory.hpp [code] | |
| global/src/IsNan.hpp [code] | |
| global/src/LogFile.cpp [code] | |
| global/src/LogFile.hpp [code] | |
| global/src/OutputDirectoryFifoQueue.cpp [code] | |
| global/src/OutputDirectoryFifoQueue.hpp [code] | |
| global/src/OutputFileHandler.cpp [code] | |
| global/src/OutputFileHandler.hpp [code] | |
| global/src/ProgressReporter.cpp [code] | |
| global/src/ProgressReporter.hpp [code] | |
| global/src/RandomNumberGenerator.cpp [code] | |
| global/src/RandomNumberGenerator.hpp [code] | |
| global/src/TimeStepper.cpp [code] | |
| global/src/TimeStepper.hpp [code] | |
| global/src/VectorHelperFunctions.hpp [code] | |
| global/src/Version.hpp [code] | |
| global/src/Warnings.cpp [code] | |
| global/src/Warnings.hpp [code] | |
| global/src/checkpointing/ArchiveLocationInfo.cpp [code] | |
| global/src/checkpointing/ArchiveLocationInfo.hpp [code] | |
| global/src/checkpointing/ArchiveOpener.cpp [code] | |
| global/src/checkpointing/ArchiveOpener.hpp [code] | |
| global/src/checkpointing/ChasteSerialization.hpp [code] | |
| global/src/checkpointing/CheckpointArchiveTypes.hpp [code] | |
| global/src/checkpointing/CheckpointArchiveTypesIfNeeded.hpp [code] | |
| global/src/checkpointing/ClassIsAbstract.hpp [code] | |
| global/src/checkpointing/ProcessSpecificArchive.cpp [code] | |
| global/src/checkpointing/ProcessSpecificArchive.hpp [code] | |
| global/src/checkpointing/SerializationExportWrapper.hpp [code] | |
| global/src/checkpointing/SerializationExportWrapperForCpp.hpp [code] | |
| global/src/fortests/NumericFileComparison.hpp [code] | |
| global/src/fortests/PetscSetupAndFinalize.hpp [code] | |
| global/src/parallel/DistributedVector.cpp [code] | |
| global/src/parallel/DistributedVector.hpp [code] | |
| global/src/parallel/DistributedVectorException.cpp [code] | |
| global/src/parallel/DistributedVectorException.hpp [code] | |
| global/src/parallel/DistributedVectorFactory.cpp [code] | |
| global/src/parallel/DistributedVectorFactory.hpp [code] | |
| global/src/parallel/PetscException.cpp [code] | |
| global/src/parallel/PetscException.hpp [code] | |
| global/src/parallel/PetscTools.cpp [code] | |
| global/src/parallel/PetscTools.hpp [code] | |
| global/src/parallel/ReplicatableVector.cpp [code] | |
| global/src/parallel/ReplicatableVector.hpp [code] | |
| global/src/timing/CellBasedEventHandler.cpp [code] | |
| global/src/timing/CellBasedEventHandler.hpp [code] | |
| global/src/timing/GenericEventHandler.hpp [code] | |
| global/src/timing/HeartEventHandler.cpp [code] | |
| global/src/timing/HeartEventHandler.hpp [code] | |
| global/src/timing/MechanicsEventHandler.cpp [code] | |
| global/src/timing/MechanicsEventHandler.hpp [code] | |
| global/src/timing/Timer.cpp [code] | |
| global/src/timing/Timer.hpp [code] | |
| heart/src/convergence/AbstractConvergenceTester.cpp [code] | |
| heart/src/convergence/AbstractConvergenceTester.hpp [code] | |
| heart/src/convergence/OdeConvergenceTester.hpp [code] | |
| heart/src/convergence/OdePdeConvergenceTester.hpp [code] | |
| heart/src/convergence/PdeConvergenceTester.hpp [code] | |
| heart/src/convergence/SpaceConvergenceTester.hpp [code] | |
| heart/src/fortests/CheckMonoLr91Vars.hpp [code] | |
| heart/src/fortests/RunAndCheckIonicModels.hpp [code] | |
| heart/src/fortests/SimpleBathProblemSetup.hpp [code] | |
| heart/src/io/FibreReader.cpp [code] | |
| heart/src/io/FibreReader.hpp [code] | |
| heart/src/io/HeartFileFinder.cpp [code] | |
| heart/src/io/HeartFileFinder.hpp [code] | |
| heart/src/odes/AbstractBackwardEulerCardiacCell.hpp [code] | |
| heart/src/odes/AbstractCardiacCell.cpp [code] | |
| heart/src/odes/AbstractCardiacCell.hpp [code] | |
| heart/src/odes/AbstractCardiacCellInterface.cpp [code] | |
| heart/src/odes/AbstractCardiacCellInterface.hpp [code] | |
| heart/src/odes/AbstractCardiacCellWithModifiers.cpp [code] | |
| heart/src/odes/AbstractCardiacCellWithModifiers.hpp [code] | |
| heart/src/odes/AbstractCvodeCell.cpp [code] | |
| heart/src/odes/AbstractCvodeCell.hpp [code] | |
| heart/src/odes/AbstractDynamicallyLoadableEntity.cpp [code] | |
| heart/src/odes/AbstractDynamicallyLoadableEntity.hpp [code] | |
| heart/src/odes/AbstractModifier.hpp [code] | |
| heart/src/odes/CardiacNewtonSolver.hpp [code] | |
| heart/src/odes/CellMLToSharedLibraryConverter.cpp [code] | |
| heart/src/odes/CellMLToSharedLibraryConverter.hpp [code] | |
| heart/src/odes/DynamicCellModelLoader.cpp [code] | |
| heart/src/odes/DynamicCellModelLoader.hpp [code] | |
| heart/src/odes/DynamicModelLoaderRegistry.cpp [code] | |
| heart/src/odes/DynamicModelLoaderRegistry.hpp [code] | |
| heart/src/odes/FakeBathCell.cpp [code] | |
| heart/src/odes/FakeBathCell.hpp [code] | |
| heart/src/odes/Modifiers.hpp [code] | |
| heart/src/odes/contractionmodels/AbstractAlgebraicContractionModel.hpp [code] | |
| heart/src/odes/contractionmodels/AbstractContractionModel.hpp [code] | |
| heart/src/odes/contractionmodels/AbstractOdeBasedContractionModel.hpp [code] | |
| heart/src/odes/contractionmodels/Kerchoffs2003ContractionModel.cpp [code] | |
| heart/src/odes/contractionmodels/Kerchoffs2003ContractionModel.hpp [code] | |
| heart/src/odes/contractionmodels/Nash2004ContractionModel.cpp [code] | |
| heart/src/odes/contractionmodels/Nash2004ContractionModel.hpp [code] | |
| heart/src/odes/contractionmodels/NhsContractionModel.cpp [code] | |
| heart/src/odes/contractionmodels/NhsContractionModel.hpp [code] | |
| heart/src/odes/contractionmodels/NhsModelWithBackwardSolver.cpp [code] | |
| heart/src/odes/contractionmodels/NhsModelWithBackwardSolver.hpp [code] | |
| heart/src/odes/contractionmodels/NonPhysiologicalContractionModel.cpp [code] | |
| heart/src/odes/contractionmodels/NonPhysiologicalContractionModel.hpp [code] | |
| heart/src/odes/ionicmodels/FitzHughNagumo1961OdeSystem.cpp [code] | |
| heart/src/odes/ionicmodels/FitzHughNagumo1961OdeSystem.hpp [code] | |
| heart/src/odes/ionicmodels/NobleVargheseKohlNoble1998WithSac.cpp [code] | |
| heart/src/odes/ionicmodels/NobleVargheseKohlNoble1998WithSac.hpp [code] | |
| heart/src/postprocessing/AbstractHdf5Converter.cpp [code] | |
| heart/src/postprocessing/AbstractHdf5Converter.hpp [code] | |
| heart/src/postprocessing/CellProperties.cpp [code] | |
| heart/src/postprocessing/CellProperties.hpp [code] | |
| heart/src/postprocessing/Hdf5ToCmguiConverter.cpp [code] | |
| heart/src/postprocessing/Hdf5ToCmguiConverter.hpp [code] | |
| heart/src/postprocessing/Hdf5ToMeshalyzerConverter.cpp [code] | |
| heart/src/postprocessing/Hdf5ToMeshalyzerConverter.hpp [code] | |
| heart/src/postprocessing/Hdf5ToVtkConverter.cpp [code] | |
| heart/src/postprocessing/Hdf5ToVtkConverter.hpp [code] | |
| heart/src/postprocessing/PostProcessingWriter.cpp [code] | |
| heart/src/postprocessing/PostProcessingWriter.hpp [code] | |
| heart/src/postprocessing/PropagationPropertiesCalculator.cpp [code] | |
| heart/src/postprocessing/PropagationPropertiesCalculator.hpp [code] | |
| heart/src/postprocessing/PseudoEcgCalculator.cpp [code] | |
| heart/src/postprocessing/PseudoEcgCalculator.hpp [code] | |
| heart/src/postprocessing/VoltageInterpolaterOntoMechanicsMesh.cpp [code] | |
| heart/src/postprocessing/VoltageInterpolaterOntoMechanicsMesh.hpp [code] | |
| heart/src/problem/AbstractCardiacCellFactory.cpp [code] | |
| heart/src/problem/AbstractCardiacCellFactory.hpp [code] | |
| heart/src/problem/AbstractCardiacProblem.cpp [code] | |
| heart/src/problem/AbstractCardiacProblem.hpp [code] | |
| heart/src/problem/AbstractConductivityTensors.cpp [code] | |
| heart/src/problem/AbstractConductivityTensors.hpp [code] | |
| heart/src/problem/AxisymmetricConductivityTensors.cpp [code] | |
| heart/src/problem/AxisymmetricConductivityTensors.hpp [code] | |
| heart/src/problem/BidomainProblem.cpp [code] | |
| heart/src/problem/BidomainProblem.hpp [code] | |
| heart/src/problem/BidomainWithBathProblem.cpp [code] | |
| heart/src/problem/BidomainWithBathProblem.hpp [code] | |
| heart/src/problem/CardiacElectroMechanicsProblem.cpp [code] | |
| heart/src/problem/CardiacElectroMechanicsProblem.hpp [code] | |
| heart/src/problem/CardiacElectroMechProbRegularGeom.hpp [code] | |
| heart/src/problem/CardiacSimulation.hpp [code] | |
| heart/src/problem/CardiacSimulationArchiver.hpp [code] | |
| heart/src/problem/Electrodes.cpp [code] | |
| heart/src/problem/Electrodes.hpp [code] | |
| heart/src/problem/GeneralPlaneStimulusCellFactory.hpp [code] | |
| heart/src/problem/HeartConfig.cpp [code] | |
| heart/src/problem/HeartConfig.hpp [code] | |
| heart/src/problem/HeartConfigDefaults.hpp [code] | |
| heart/src/problem/HeartConfigRelatedCellFactory.cpp [code] | |
| heart/src/problem/HeartConfigRelatedCellFactory.hpp [code] | |
| heart/src/problem/HeartGeometryInformation.cpp [code] | |
| heart/src/problem/HeartGeometryInformation.hpp [code] | |
| heart/src/problem/HeartRegionCodes.cpp [code] | |
| heart/src/problem/HeartRegionCodes.hpp [code] | |
| heart/src/problem/MonodomainProblem.cpp [code] | |
| heart/src/problem/MonodomainProblem.hpp [code] | |
| heart/src/problem/OrthotropicConductivityTensors.cpp [code] | |
| heart/src/problem/OrthotropicConductivityTensors.hpp [code] | |
| heart/src/problem/PapillaryFibreCalculator.hpp [code] | |
| heart/src/problem/PlaneStimulusCellFactory.hpp [code] | |
| heart/src/problem/StreeterFibreGenerator.cpp [code] | |
| heart/src/problem/StreeterFibreGenerator.hpp [code] | |
| heart/src/problem/ZeroStimulusCellFactory.hpp [code] | |
| heart/src/solver/electrics/AbstractBidomainSolver.cpp [code] | |
| heart/src/solver/electrics/AbstractBidomainSolver.hpp [code] | |
| heart/src/solver/electrics/AbstractMonodomainSolver.cpp [code] | |
| heart/src/solver/electrics/AbstractMonodomainSolver.hpp [code] | |
| heart/src/solver/electrics/BasicBidomainSolver.cpp [code] | |
| heart/src/solver/electrics/BasicBidomainSolver.hpp [code] | |
| heart/src/solver/electrics/BasicMonodomainSolver.cpp [code] | |
| heart/src/solver/electrics/BasicMonodomainSolver.hpp [code] | |
| heart/src/solver/electrics/BidomainAssembler.cpp [code] | |
| heart/src/solver/electrics/BidomainAssembler.hpp [code] | |
| heart/src/solver/electrics/BidomainMassMatrixAssembler.cpp [code] | |
| heart/src/solver/electrics/BidomainMassMatrixAssembler.hpp [code] | |
| heart/src/solver/electrics/BidomainWithBathAssembler.cpp [code] | |
| heart/src/solver/electrics/BidomainWithBathAssembler.hpp [code] | |
| heart/src/solver/electrics/MatrixBasedBidomainSolver.cpp [code] | |
| heart/src/solver/electrics/MatrixBasedBidomainSolver.hpp [code] | |
| heart/src/solver/electrics/MatrixBasedMonodomainSolver.cpp [code] | |
| heart/src/solver/electrics/MatrixBasedMonodomainSolver.hpp [code] | |
| heart/src/solver/electrics/MonodomainAssembler.cpp [code] | |
| heart/src/solver/electrics/MonodomainAssembler.hpp [code] | |
| heart/src/solver/mechanics/AbstractCardiacMechanicsSolver.hpp [code] | |
| heart/src/solver/mechanics/ExplicitCardiacMechanicsSolver.cpp [code] | |
| heart/src/solver/mechanics/ExplicitCardiacMechanicsSolver.hpp [code] | |
| heart/src/solver/mechanics/ImplicitCardiacMechanicsSolver.cpp [code] | |
| heart/src/solver/mechanics/ImplicitCardiacMechanicsSolver.hpp [code] | |
| heart/src/stimulus/AbstractStimulusFunction.cpp [code] | |
| heart/src/stimulus/AbstractStimulusFunction.hpp [code] | |
| heart/src/stimulus/MultiStimulus.cpp [code] | |
| heart/src/stimulus/MultiStimulus.hpp [code] | |
| heart/src/stimulus/RegularStimulus.cpp [code] | |
| heart/src/stimulus/RegularStimulus.hpp [code] | |
| heart/src/stimulus/SimpleStimulus.cpp [code] | |
| heart/src/stimulus/SimpleStimulus.hpp [code] | |
| heart/src/stimulus/StimulusBoundaryCondition.cpp [code] | |
| heart/src/stimulus/StimulusBoundaryCondition.hpp [code] | |
| heart/src/stimulus/ZeroStimulus.cpp [code] | |
| heart/src/stimulus/ZeroStimulus.hpp [code] | |
| heart/src/tissue/AbstractCardiacTissue.cpp [code] | |
| heart/src/tissue/AbstractCardiacTissue.hpp [code] | |
| heart/src/tissue/BidomainTissue.cpp [code] | |
| heart/src/tissue/BidomainTissue.hpp [code] | |
| heart/src/tissue/MonodomainTissue.cpp [code] | |
| heart/src/tissue/MonodomainTissue.hpp [code] | |
| io/src/common/ColumnDataConstants.hpp [code] | |
| io/src/fortests/CompareHdf5ResultsFiles.cpp [code] | |
| io/src/fortests/CompareHdf5ResultsFiles.hpp [code] | |
| io/src/reader/AbstractDataReader.hpp [code] | |
| io/src/reader/ColumnDataReader.cpp [code] | |
| io/src/reader/ColumnDataReader.hpp [code] | |
| io/src/reader/Hdf5DataReader.cpp [code] | |
| io/src/reader/Hdf5DataReader.hpp [code] | |
| io/src/writer/AbstractDataWriter.hpp [code] | |
| io/src/writer/ColumnDataWriter.cpp [code] | |
| io/src/writer/ColumnDataWriter.hpp [code] | |
| io/src/writer/DataWriterVariable.hpp [code] | |
| io/src/writer/Hdf5DataWriter.cpp [code] | |
| io/src/writer/Hdf5DataWriter.hpp [code] | |
| io/src/writer/ParallelColumnDataWriter.cpp [code] | |
| io/src/writer/ParallelColumnDataWriter.hpp [code] | |
| io/src/writer/SimpleDataWriter.cpp [code] | |
| io/src/writer/SimpleDataWriter.hpp [code] | |
| linalg/src/common/AbstractNonlinearSolver.hpp [code] | |
| linalg/src/common/FourthOrderTensor.hpp [code] | |
| linalg/src/common/LinearSystem.cpp [code] | |
| linalg/src/common/LinearSystem.hpp [code] | |
| linalg/src/common/PCBlockDiagonal.cpp [code] | |
| linalg/src/common/PCBlockDiagonal.hpp [code] | |
| linalg/src/common/PCLDUFactorisation.cpp [code] | |
| linalg/src/common/PCLDUFactorisation.hpp [code] | |
| linalg/src/common/PCTwoLevelsBlockDiagonal.cpp [code] | |
| linalg/src/common/PCTwoLevelsBlockDiagonal.hpp [code] | |
| linalg/src/common/SimpleNewtonNonlinearSolver.cpp [code] | |
| linalg/src/common/SimpleNewtonNonlinearSolver.hpp [code] | |
| linalg/src/common/SimplePetscNonlinearSolver.cpp [code] | |
| linalg/src/common/SimplePetscNonlinearSolver.hpp [code] | |
| linalg/src/common/UblasCustomFunctions.cpp [code] | |
| linalg/src/common/UblasCustomFunctions.hpp [code] | |
| linalg/src/common/UblasIncludes.hpp [code] | |
| linalg/src/common/UblasMatrixInclude.hpp [code] | |
| linalg/src/common/UblasVectorInclude.hpp [code] | |
| mesh/src/3rdparty/tetgen1.4.2/predicates.cpp [code] | |
| mesh/src/3rdparty/tetgen1.4.2/predicates.hpp [code] | |
| mesh/src/3rdparty/tetgen1.4.2/tetgen.cpp [code] | |
| mesh/src/3rdparty/triangle/triangle.cpp [code] | |
| mesh/src/common/AbstractChasteRegion.hpp [code] | |
| mesh/src/common/AbstractElement.cpp [code] | |
| mesh/src/common/AbstractElement.hpp [code] | |
| mesh/src/common/AbstractMesh.cpp [code] | |
| mesh/src/common/AbstractMesh.hpp [code] | |
| mesh/src/common/AbstractTetrahedralElement.cpp [code] | |
| mesh/src/common/AbstractTetrahedralElement.hpp [code] | |
| mesh/src/common/AbstractTetrahedralMesh.cpp [code] | |
| mesh/src/common/AbstractTetrahedralMesh.hpp [code] | |
| mesh/src/common/BoundaryElement.cpp [code] | |
| mesh/src/common/BoundaryElement.hpp [code] | |
| mesh/src/common/ChastePoint.cpp [code] | |
| mesh/src/common/ChastePoint.hpp [code] | |
| mesh/src/common/DistributedTetrahedralMesh.cpp [code] | |
| mesh/src/common/DistributedTetrahedralMesh.hpp [code] | |
| mesh/src/common/Element.cpp [code] | |
| mesh/src/common/Element.hpp [code] | |
| mesh/src/common/MutableMesh.cpp [code] | |
| mesh/src/common/MutableMesh.hpp [code] | |
| mesh/src/common/Node.cpp [code] | |
| mesh/src/common/Node.hpp [code] | |
| mesh/src/common/NodeMap.cpp [code] | |
| mesh/src/common/NodeMap.hpp [code] | |
| mesh/src/common/NonCachedTetrahedralMesh.cpp [code] | |
| mesh/src/common/NonCachedTetrahedralMesh.hpp [code] | |
| mesh/src/common/QuadraticMesh.cpp [code] | |
| mesh/src/common/QuadraticMesh.hpp [code] | |
| mesh/src/common/TetrahedralMesh.cpp [code] | |
| mesh/src/common/TetrahedralMesh.hpp [code] | |
| mesh/src/reader/AbstractCachedMeshReader.cpp [code] | |
| mesh/src/reader/AbstractCachedMeshReader.hpp [code] | |
| mesh/src/reader/AbstractMeshReader.cpp [code] | |
| mesh/src/reader/AbstractMeshReader.hpp [code] | |
| mesh/src/reader/FemlabMeshReader.cpp [code] | |
| mesh/src/reader/FemlabMeshReader.hpp [code] | |
| mesh/src/reader/GenericMeshReader.hpp [code] | |
| mesh/src/reader/MemfemMeshReader.cpp [code] | |
| mesh/src/reader/MemfemMeshReader.hpp [code] | |
| mesh/src/reader/TrianglesMeshReader.cpp [code] | |
| mesh/src/reader/TrianglesMeshReader.hpp [code] | |
| mesh/src/reader/VtkMeshReader.cpp [code] | |
| mesh/src/reader/VtkMeshReader.hpp [code] | |
| mesh/src/utilities/BoxCollection.cpp [code] | |
| mesh/src/utilities/BoxCollection.hpp [code] | |
| mesh/src/utilities/ChasteCuboid.hpp [code] | |
| mesh/src/utilities/ChasteEllipsoid.hpp [code] | |
| mesh/src/utilities/ChasteNodesList.hpp [code] | |
| mesh/src/utilities/CuboidMeshConstructor.cpp [code] | |
| mesh/src/utilities/CuboidMeshConstructor.hpp [code] | |
| mesh/src/utilities/DistanceMapCalculator.cpp [code] | |
| mesh/src/utilities/DistanceMapCalculator.hpp [code] | |
| mesh/src/vertex/HoneycombMutableVertexMeshGenerator.cpp [code] | |
| mesh/src/vertex/HoneycombMutableVertexMeshGenerator.hpp [code] | |
| mesh/src/vertex/HoneycombVertexMeshGenerator.cpp [code] | |
| mesh/src/vertex/HoneycombVertexMeshGenerator.hpp [code] | |
| mesh/src/vertex/MutableVertexMesh.cpp [code] | |
| mesh/src/vertex/MutableVertexMesh.hpp [code] | |
| mesh/src/vertex/VertexElement.cpp [code] | |
| mesh/src/vertex/VertexElement.hpp [code] | |
| mesh/src/vertex/VertexElementMap.cpp [code] | |
| mesh/src/vertex/VertexElementMap.hpp [code] | |
| mesh/src/vertex/VertexMesh.cpp [code] | |
| mesh/src/vertex/VertexMesh.hpp [code] | |
| mesh/src/vertex/VertexMeshReader.cpp [code] | |
| mesh/src/vertex/VertexMeshReader.hpp [code] | |
| mesh/src/vertex/VertexMeshWriter.cpp [code] | |
| mesh/src/vertex/VertexMeshWriter.hpp [code] | |
| mesh/src/writer/AbstractMeshWriter.cpp [code] | |
| mesh/src/writer/AbstractMeshWriter.hpp [code] | |
| mesh/src/writer/AbstractTetrahedralMeshWriter.cpp [code] | |
| mesh/src/writer/AbstractTetrahedralMeshWriter.hpp [code] | |
| mesh/src/writer/CmguiDeformedSolutionsWriter.cpp [code] | |
| mesh/src/writer/CmguiDeformedSolutionsWriter.hpp [code] | |
| mesh/src/writer/CmguiMeshWriter.cpp [code] | |
| mesh/src/writer/CmguiMeshWriter.hpp [code] | |
| mesh/src/writer/MeshalyzerMeshWriter.cpp [code] | |
| mesh/src/writer/MeshalyzerMeshWriter.hpp [code] | |
| mesh/src/writer/TrianglesMeshWriter.cpp [code] | |
| mesh/src/writer/TrianglesMeshWriter.hpp [code] | |
| mesh/src/writer/VtkMeshWriter.hpp [code] | |
| ode/src/common/AbstractOdeSystem.cpp [code] | |
| ode/src/common/AbstractOdeSystem.hpp [code] | |
| ode/src/common/AbstractOdeSystemInformation.cpp [code] | |
| ode/src/common/AbstractOdeSystemInformation.hpp [code] | |
| ode/src/common/AbstractOdeSystemWithAnalyticJacobian.hpp [code] | |
| ode/src/common/AbstractParameterisedSystem.cpp [code] | |
| ode/src/common/AbstractParameterisedSystem.hpp [code] | |
| ode/src/common/CombinedOdeSystem.cpp [code] | |
| ode/src/common/CombinedOdeSystem.hpp [code] | |
| ode/src/common/CombinedOdeSystemInformation.cpp [code] | |
| ode/src/common/CombinedOdeSystemInformation.hpp [code] | |
| ode/src/common/OdeSolution.cpp [code] | |
| ode/src/common/OdeSolution.hpp [code] | |
| ode/src/common/OdeSystemInformation.hpp [code] | |
| ode/src/solver/AbstractIvpOdeSolver.cpp [code] | |
| ode/src/solver/AbstractIvpOdeSolver.hpp [code] | |
| ode/src/solver/AbstractOneStepIvpOdeSolver.cpp [code] | |
| ode/src/solver/AbstractOneStepIvpOdeSolver.hpp [code] | |
| ode/src/solver/BackwardEulerIvpOdeSolver.cpp [code] | |
| ode/src/solver/BackwardEulerIvpOdeSolver.hpp [code] | |
| ode/src/solver/CvodeAdaptor.cpp [code] | |
| ode/src/solver/CvodeAdaptor.hpp [code] | |
| ode/src/solver/EulerIvpOdeSolver.cpp [code] | |
| ode/src/solver/EulerIvpOdeSolver.hpp [code] | |
| ode/src/solver/HeunIvpOdeSolver.cpp [code] | |
| ode/src/solver/HeunIvpOdeSolver.hpp [code] | |
| ode/src/solver/MockEulerIvpOdeSolver.cpp [code] | |
| ode/src/solver/MockEulerIvpOdeSolver.hpp [code] | |
| ode/src/solver/RungeKutta2IvpOdeSolver.cpp [code] | |
| ode/src/solver/RungeKutta2IvpOdeSolver.hpp [code] | |
| ode/src/solver/RungeKutta4IvpOdeSolver.cpp [code] | |
| ode/src/solver/RungeKutta4IvpOdeSolver.hpp [code] | |
| ode/src/solver/RungeKuttaFehlbergIvpOdeSolver.cpp [code] | |
| ode/src/solver/RungeKuttaFehlbergIvpOdeSolver.hpp [code] | |
| pde/src/common/AbstractBoundaryCondition.hpp [code] | |
| pde/src/common/AbstractBoundaryConditionsContainer.cpp [code] | |
| pde/src/common/AbstractBoundaryConditionsContainer.hpp [code] | |
| pde/src/common/AbstractBoundaryConditionsContainerImplementation.hpp [code] | |
| pde/src/common/AbstractFunctionalCalculator.hpp [code] | |
| pde/src/common/BoundaryConditionsContainer.cpp [code] | |
| pde/src/common/BoundaryConditionsContainer.hpp [code] | |
| pde/src/common/BoundaryConditionsContainerImplementation.hpp [code] | |
| pde/src/common/ConstBoundaryCondition.cpp [code] | |
| pde/src/common/ConstBoundaryCondition.hpp [code] | |
| pde/src/common/FunctionalBoundaryCondition.cpp [code] | |
| pde/src/common/FunctionalBoundaryCondition.hpp [code] | |
| pde/src/common/NonlinearElasticityTools.cpp [code] | |
| pde/src/common/NonlinearElasticityTools.hpp [code] | |
| pde/src/common/PdeSimulationTime.cpp [code] | |
| pde/src/common/PdeSimulationTime.hpp [code] | |
| pde/src/common/QuadraturePointsGroup.cpp [code] | |
| pde/src/common/QuadraturePointsGroup.hpp [code] | |
| pde/src/problem/FineCoarseMeshPair.cpp [code] | |
| pde/src/problem/FineCoarseMeshPair.hpp [code] | |
| pde/src/problem/common/AbstractIncompressibleMaterialLaw.cpp [code] | |
| pde/src/problem/common/AbstractIncompressibleMaterialLaw.hpp [code] | |
| pde/src/problem/common/AbstractIsotropicIncompressibleMaterialLaw.cpp [code] | |
| pde/src/problem/common/AbstractIsotropicIncompressibleMaterialLaw.hpp [code] | |
| pde/src/problem/common/AbstractLinearEllipticPde.hpp [code] | |
| pde/src/problem/common/AbstractLinearParabolicPde.hpp [code] | |
| pde/src/problem/common/AbstractNonlinearEllipticPde.hpp [code] | |
| pde/src/problem/common/ExponentialMaterialLaw.cpp [code] | |
| pde/src/problem/common/ExponentialMaterialLaw.hpp [code] | |
| pde/src/problem/common/MooneyRivlinMaterialLaw.cpp [code] | |
| pde/src/problem/common/MooneyRivlinMaterialLaw.hpp [code] | |
| pde/src/problem/common/NashHunterPoleZeroLaw.cpp [code] | |
| pde/src/problem/common/NashHunterPoleZeroLaw.hpp [code] | |
| pde/src/problem/common/PoleZeroMaterialLaw.cpp [code] | |
| pde/src/problem/common/PoleZeroMaterialLaw.hpp [code] | |
| pde/src/problem/common/PolynomialMaterialLaw3d.cpp [code] | |
| pde/src/problem/common/PolynomialMaterialLaw3d.hpp [code] | |
| pde/src/problem/common/SchmidCostaExponentialLaw2d.cpp [code] | |
| pde/src/problem/common/SchmidCostaExponentialLaw2d.hpp [code] | |
| pde/src/solver/common/AbstractAssemblerSolverHybrid.hpp [code] | |
| pde/src/solver/common/AbstractDynamicLinearPdeSolver.hpp [code] | |
| pde/src/solver/common/AbstractFeObjectAssembler.hpp [code] | |
| pde/src/solver/common/AbstractLinearPdeSolver.hpp [code] | |
| pde/src/solver/common/AbstractNonlinearAssemblerSolverHybrid.hpp [code] | |
| pde/src/solver/common/AbstractNonlinearElasticitySolver.hpp [code] | |
| pde/src/solver/common/AbstractStaticLinearPdeSolver.hpp [code] | |
| pde/src/solver/common/GaussianQuadratureRule.cpp [code] | |
| pde/src/solver/common/GaussianQuadratureRule.hpp [code] | |
| pde/src/solver/common/LinearBasisFunction.cpp [code] | |
| pde/src/solver/common/LinearBasisFunction.hpp [code] | |
| pde/src/solver/common/MassMatrixAssembler.hpp [code] | |
| pde/src/solver/common/NonlinearElasticitySolver.cpp [code] | |
| pde/src/solver/common/NonlinearElasticitySolver.hpp [code] | |
| pde/src/solver/common/QuadraticBasisFunction.cpp [code] | |
| pde/src/solver/common/QuadraticBasisFunction.hpp [code] | |
| pde/src/solver/common/SimpleLinearEllipticSolver.cpp [code] | |
| pde/src/solver/common/SimpleLinearEllipticSolver.hpp [code] | |
| pde/src/solver/common/SimpleLinearParabolicSolver.cpp [code] | |
| pde/src/solver/common/SimpleLinearParabolicSolver.hpp [code] | |
| pde/src/solver/common/SimpleNonlinearEllipticSolver.cpp [code] | |
| pde/src/solver/common/SimpleNonlinearEllipticSolver.hpp [code] | |
