, including all inherited members.
| AddCellKiller(AbstractCellKiller< DIM > *pCellKiller) | CellBasedSimulation< DIM > | [inline] |
| AddForce(AbstractForce< DIM > *pForce) | CellBasedSimulation< DIM > | [inline] |
| AfterSolve() | CellBasedSimulationWithPdes< DIM > | [inline, private, virtual] |
| ApplyCellPopulationBoundaryConditions(const std::vector< c_vector< double, DIM > > &rOldLocations) | CellBasedSimulation< DIM > | [inline, protected, virtual] |
| boost::serialization::access class | CellBasedSimulationWithPdes< DIM > | [friend] |
| CalculateCellDivisionVector(CellPtr pParentCell) | CellBasedSimulation< DIM > | [inline, protected, virtual] |
| CellBasedSimulation(AbstractCellPopulation< DIM > &rCellPopulation, bool deleteCellPopulationAndForceCollection=false, bool initialiseCells=true) | CellBasedSimulation< DIM > | [inline] |
| CellBasedSimulationWithPdes(AbstractCellPopulation< DIM > &rCellPopulation, std::vector< PdeAndBoundaryConditions< DIM > * > pdeAndBcCollection=std::vector< PdeAndBoundaryConditions< DIM > * >(), bool deleteCellPopulationAndForceCollection=false, bool initialiseCells=true) | CellBasedSimulationWithPdes< DIM > | [inline] |
| CreateCoarsePdeMesh(double coarseGrainScaleFactor) | CellBasedSimulationWithPdes< DIM > | [inline, private] |
| CreateCoarsePdeMesh(double coarseGrainScaleFactor) | CellBasedSimulationWithPdes< DIM > | [inline] |
| DoCellBirth() | CellBasedSimulation< DIM > | [inline, protected, virtual] |
| DoCellRemoval() | CellBasedSimulation< DIM > | [inline, protected] |
| FindCoarseElementContainingCell(CellPtr pCell) | CellBasedSimulationWithPdes< DIM > | [inline, private] |
| GetCurrentPdeSolution(unsigned pdeIndex) | CellBasedSimulationWithPdes< DIM > | [inline] |
| GetDt() | CellBasedSimulation< DIM > | [inline] |
| GetIdentifier() const | Identifiable | |
| GetNodeLocation(const unsigned &rNodeIndex) | CellBasedSimulation< DIM > | [inline] |
| GetNumBirths() | CellBasedSimulation< DIM > | [inline] |
| GetNumDeaths() | CellBasedSimulation< DIM > | [inline] |
| GetOutputDirectory() | CellBasedSimulation< DIM > | [inline] |
| GetOutputNodeVelocities() | CellBasedSimulation< DIM > | [inline] |
| InitialiseCoarsePdeMesh() | CellBasedSimulationWithPdes< DIM > | [inline, private] |
| mAllocatedMemoryForForceCollection | CellBasedSimulation< DIM > | [protected] |
| mCellKillers | CellBasedSimulation< DIM > | [protected] |
| mCellPdeElementMap | CellBasedSimulationWithPdes< DIM > | [private] |
| mDeleteCellPopulation | CellBasedSimulation< DIM > | [protected] |
| mDt | CellBasedSimulation< DIM > | [protected] |
| mEndTime | CellBasedSimulation< DIM > | [protected] |
| mForceCollection | CellBasedSimulation< DIM > | [protected] |
| mInitialiseCells | CellBasedSimulation< DIM > | [protected] |
| mNoBirth | CellBasedSimulation< DIM > | [protected] |
| mNumBirths | CellBasedSimulation< DIM > | [protected] |
| mNumDeaths | CellBasedSimulation< DIM > | [protected] |
| mNumRadialIntervals | CellBasedSimulationWithPdes< DIM > | [private] |
| mOutputDirectory | CellBasedSimulation< DIM > | [protected] |
| mOutputNodeVelocities | CellBasedSimulation< DIM > | [protected] |
| mpAverageRadialPdeSolutionResultsFile | CellBasedSimulationWithPdes< DIM > | [private] |
| mpCoarsePdeMesh | CellBasedSimulationWithPdes< DIM > | [private] |
| mPdeAndBcCollection | CellBasedSimulationWithPdes< DIM > | [private] |
| mpNodeVelocitiesFile | CellBasedSimulation< DIM > | [protected] |
| mpRandomGenerator | CellBasedSimulation< DIM > | [protected] |
| mpVizPdeSolutionResultsFile | CellBasedSimulationWithPdes< DIM > | [private] |
| mpVizSetupFile | CellBasedSimulation< DIM > | [protected] |
| mrCellPopulation | CellBasedSimulation< DIM > | [protected] |
| mSamplingTimestepMultiple | CellBasedSimulation< DIM > | [protected] |
| mSimulationOutputDirectory | CellBasedSimulation< DIM > | [protected] |
| mUpdateCellPopulation | CellBasedSimulation< DIM > | [protected] |
| mWriteAverageRadialPdeSolution | CellBasedSimulationWithPdes< DIM > | [private] |
| mWriteDailyAverageRadialPdeSolution | CellBasedSimulationWithPdes< DIM > | [private] |
| OutputSimulationParameters(out_stream &rParamsFile) | CellBasedSimulationWithPdes< DIM > | [inline, virtual] |
| OutputSimulationSetup() | CellBasedSimulation< DIM > | [inline, protected] |
| PostSolve() | CellBasedSimulationWithPdes< DIM > | [inline, private, virtual] |
| rGetCellPopulation() | CellBasedSimulation< DIM > | [inline] |
| rGetCellPopulation() const | CellBasedSimulation< DIM > | [inline] |
| rGetForceCollection() const | CellBasedSimulation< DIM > | [inline] |
| serialize(Archive &archive, const unsigned int version) | CellBasedSimulationWithPdes< DIM > | [inline, private] |
| SetDt(double dt) | CellBasedSimulation< DIM > | [inline] |
| SetEndTime(double endTime) | CellBasedSimulation< DIM > | [inline] |
| SetNoBirth(bool noBirth) | CellBasedSimulation< DIM > | [inline] |
| SetOutputDirectory(std::string outputDirectory) | CellBasedSimulation< DIM > | [inline] |
| SetOutputNodeVelocities(bool outputNodeVelocities) | CellBasedSimulation< DIM > | [inline] |
| SetPdeAndBcCollection(std::vector< PdeAndBoundaryConditions< DIM > * > pdeAndBcCollection) | CellBasedSimulationWithPdes< DIM > | [inline] |
| SetSamplingTimestepMultiple(unsigned samplingTimestepMultiple) | CellBasedSimulation< DIM > | [inline] |
| SetUpdateCellPopulationRule(bool updateCellPopulation) | CellBasedSimulation< DIM > | [inline] |
| SetupSolve() | CellBasedSimulationWithPdes< DIM > | [inline, private, virtual] |
| SetupWritePdeSolution() | CellBasedSimulationWithPdes< DIM > | [inline, private] |
| SetWriteAverageRadialPdeSolution(unsigned numRadialIntervals=10, bool writeDailyResults=false) | CellBasedSimulationWithPdes< DIM > | [inline] |
| Solve() | CellBasedSimulation< DIM > | [inline] |
| SolvePde() | CellBasedSimulationWithPdes< DIM > | [inline, private] |
| SolvePdeUsingCoarseMesh() | CellBasedSimulationWithPdes< DIM > | [inline, private] |
| StoppingEventHasOccurred() | CellBasedSimulation< DIM > | [inline, protected, virtual] |
| TestCellBasedSimulationWithPdes (defined in CellBasedSimulationWithPdes< DIM >) | CellBasedSimulationWithPdes< DIM > | [friend] |
| UpdateCellPopulation() | CellBasedSimulation< DIM > | [inline, protected] |
| UpdateNodePositions(const std::vector< c_vector< double, DIM > > &rNodeForces) | CellBasedSimulation< DIM > | [inline, protected, virtual] |
| UseCoarsePdeMesh(double coarseGrainScaleFactor=10.0) | CellBasedSimulationWithPdes< DIM > | [inline] |
| WriteAverageRadialPdeSolution(double time, unsigned numIntervals) | CellBasedSimulationWithPdes< DIM > | [inline, private] |
| WritePdeSolution(double time) | CellBasedSimulationWithPdes< DIM > | [inline, private] |
| WriteVisualizerSetupFile() | CellBasedSimulationWithPdes< DIM > | [inline, private, virtual] |
| ~CellBasedSimulation() | CellBasedSimulation< DIM > | [inline, virtual] |
| ~CellBasedSimulationWithPdes() | CellBasedSimulationWithPdes< DIM > | [inline] |
| ~Identifiable() | Identifiable | [virtual] |
