CryptSimulation2d Member List

This is the complete list of members for CryptSimulation2d, including all inherited members.

AddCellKiller(AbstractCellKiller< DIM > *pCellKiller)CellBasedSimulation< 2 >
AddForce(AbstractForce< DIM > *pForce)CellBasedSimulation< 2 >
AfterSolve()CryptSimulation2d [protected, virtual]
ApplyCellPopulationBoundaryConditions(const std::vector< c_vector< double, 2 > > &rOldLocations)CryptSimulation2d
CellBasedSimulation< 2 >::ApplyCellPopulationBoundaryConditions(const std::vector< c_vector< double, DIM > > &rOldLocations)CellBasedSimulation< 2 > [inline, protected, virtual]
boost::serialization::access classCryptSimulation2d [friend]
CalculateCellDivisionVector(CellPtr pParentCell)CryptSimulation2d [protected, virtual]
CellBasedSimulation(AbstractCellPopulation< DIM > &rCellPopulation, bool deleteCellPopulationAndForceCollection=false, bool initialiseCells=true)CellBasedSimulation< 2 >
CryptSimulation2d(AbstractCellPopulation< 2 > &rCellPopulation, bool deleteCellPopulationAndForceCollection=false, bool initialiseCells=true)CryptSimulation2d
DoCellBirth()CellBasedSimulation< 2 > [protected, virtual]
DoCellRemoval()CellBasedSimulation< 2 > [protected]
GetDt()CellBasedSimulation< 2 >
GetIdentifier() const Identifiable
GetNodeLocation(const unsigned &rNodeIndex)CellBasedSimulation< 2 >
GetNumBirths()CellBasedSimulation< 2 >
GetNumDeaths()CellBasedSimulation< 2 >
GetOutputDirectory()CellBasedSimulation< 2 >
GetOutputNodeVelocities()CellBasedSimulation< 2 >
mAllocatedMemoryForForceCollectionCellBasedSimulation< 2 > [protected]
mCellKillersCellBasedSimulation< 2 > [protected]
mDeleteCellPopulationCellBasedSimulation< 2 > [protected]
mDtCellBasedSimulation< 2 > [protected]
mEndTimeCellBasedSimulation< 2 > [protected]
mForceCollectionCellBasedSimulation< 2 > [protected]
mInitialiseCellsCellBasedSimulation< 2 > [protected]
mNoBirthCellBasedSimulation< 2 > [protected]
mNumBirthsCellBasedSimulation< 2 > [protected]
mNumDeathsCellBasedSimulation< 2 > [protected]
mOutputDirectoryCellBasedSimulation< 2 > [protected]
mOutputNodeVelocitiesCellBasedSimulation< 2 > [protected]
mpNodeVelocitiesFileCellBasedSimulation< 2 > [protected]
mpRandomGeneratorCellBasedSimulation< 2 > [protected]
mpStaticCastCellPopulationCryptSimulation2d [protected]
mpVizSetupFileCellBasedSimulation< 2 > [protected]
mrCellPopulationCellBasedSimulation< 2 > [protected]
mSamplingTimestepMultipleCellBasedSimulation< 2 > [protected]
mSimulationOutputDirectoryCellBasedSimulation< 2 > [protected]
mUpdateCellPopulationCellBasedSimulation< 2 > [protected]
mUseJiggledBottomCellsCryptSimulation2d [protected]
mVizBetaCateninResultsFileCryptSimulation2d [protected]
mWriteBetaCateninCryptSimulation2d [protected]
OutputSimulationParameters(out_stream &rParamsFile)CryptSimulation2d [virtual]
OutputSimulationSetup()CellBasedSimulation< 2 > [protected]
PostSolve()CryptSimulation2d [protected, virtual]
rGetCellPopulation()CellBasedSimulation< 2 >
rGetCellPopulation() const CellBasedSimulation< 2 >
rGetForceCollection() const CellBasedSimulation< 2 >
serialize(Archive &archive, const unsigned int version)CryptSimulation2d [inline, protected]
SetBottomCellAncestors()CryptSimulation2d
SetDt(double dt)CellBasedSimulation< 2 >
SetEndTime(double endTime)CellBasedSimulation< 2 >
SetNoBirth(bool noBirth)CellBasedSimulation< 2 >
SetOutputDirectory(std::string outputDirectory)CellBasedSimulation< 2 >
SetOutputNodeVelocities(bool outputNodeVelocities)CellBasedSimulation< 2 >
SetSamplingTimestepMultiple(unsigned samplingTimestepMultiple)CellBasedSimulation< 2 >
SetUpdateCellPopulationRule(bool updateCellPopulation)CellBasedSimulation< 2 >
SetupSolve()CryptSimulation2d [protected, virtual]
SetupWriteBetaCatenin()CryptSimulation2d [protected]
Solve()CellBasedSimulation< 2 >
StoppingEventHasOccurred()CellBasedSimulation< 2 > [protected, virtual]
TestCryptSimulation2d (defined in CryptSimulation2d)CryptSimulation2d [friend]
UpdateCellPopulation()CellBasedSimulation< 2 > [protected]
UpdateNodePositions(const std::vector< c_vector< double, DIM > > &rNodeForces)CellBasedSimulation< 2 > [protected, virtual]
UseJiggledBottomCells()CryptSimulation2d
WriteBetaCatenin(double time)CryptSimulation2d [protected]
WriteVisualizerSetupFile()CryptSimulation2d [protected, virtual]
~CellBasedSimulation()CellBasedSimulation< 2 > [virtual]
~Identifiable()Identifiable [virtual]


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