, including all inherited members.
AbstractCardiacCell(boost::shared_ptr< AbstractIvpOdeSolver > pOdeSolver, unsigned numberOfStateVariables, unsigned voltageIndex, boost::shared_ptr< AbstractStimulusFunction > pIntracellularStimulus) | AbstractCardiacCell | |
AbstractCardiacCellInterface(boost::shared_ptr< AbstractIvpOdeSolver > pOdeSolver, unsigned voltageIndex, boost::shared_ptr< AbstractStimulusFunction > pIntracellularStimulus) | AbstractCardiacCellInterface | |
AbstractOdeSystem(unsigned numberOfStateVariables) | AbstractOdeSystem | |
AbstractParameterisedSystem(unsigned numberOfStateVariables) | AbstractParameterisedSystem< std::vector< double > > | |
AdjustOutOfRangeSlowValues(std::vector< double > &rSlowValues) | AbstractCardiacCell | [virtual] |
boost::serialization::access class | FakeBathCell | [friend] |
CalculateRootFunction(double time, const std::vector< double > &rY) | AbstractOdeSystem | [virtual] |
CalculateStoppingEvent(double time, const std::vector< double > &rY) | AbstractOdeSystem | [virtual] |
Compute(double tStart, double tEnd, double tSamp=0.0) | AbstractCardiacCell | [virtual] |
ComputeDerivedQuantities(double time, const std::vector< double > &rState) | AbstractParameterisedSystem< std::vector< double > > | [virtual] |
ComputeDerivedQuantitiesFromCurrentState(double time) | AbstractParameterisedSystem< std::vector< double > > | |
ComputeExceptVoltage(double tStart, double tEnd) | FakeBathCell | [virtual] |
DumpState(const std::string &rMessage, std::vector< double > Y=std::vector< double >()) | AbstractOdeSystem | [protected] |
EvaluateYDerivatives(double time, const std::vector< double > &rY, std::vector< double > &rDY) | FakeBathCell | [virtual] |
FakeBathCell(boost::shared_ptr< AbstractIvpOdeSolver > pSolver, boost::shared_ptr< AbstractStimulusFunction > pIntracellularStimulus) | FakeBathCell | |
GetAnyVariable(unsigned index, double time=0.0, std::vector< double > *pDerivedQuantities=NULL) | AbstractParameterisedSystem< std::vector< double > > | |
GetAnyVariableIndex(const std::string &rName) const | AbstractParameterisedSystem< std::vector< double > > | |
GetAnyVariableUnits(unsigned index) const | AbstractParameterisedSystem< std::vector< double > > | |
GetDerivedQuantityIndex(const std::string &rName) const | AbstractParameterisedSystem< std::vector< double > > | |
GetDerivedQuantityUnits(unsigned index) const | AbstractParameterisedSystem< std::vector< double > > | |
GetIIonic() | FakeBathCell | [virtual] |
GetInitialConditions() const | AbstractOdeSystem | |
GetIntracellularAreaStimulus(double time) | AbstractCardiacCellInterface | |
GetIntracellularCalciumConcentration() | AbstractCardiacCell | [virtual] |
GetIntracellularStimulus(double time) | AbstractCardiacCellInterface | |
GetNumberOfDerivedQuantities() const | AbstractParameterisedSystem< std::vector< double > > | |
GetNumberOfParameters() const | AbstractParameterisedSystem< std::vector< double > > | |
GetNumberOfStateVariables() const | AbstractParameterisedSystem< std::vector< double > > | |
GetNumSlowValues() | AbstractCardiacCell | [virtual] |
GetParameter(unsigned index) const | AbstractParameterisedSystem< std::vector< double > > | |
GetParameterIndex(const std::string &rName) const | AbstractParameterisedSystem< std::vector< double > > | |
GetParameterUnits(unsigned index) const | AbstractParameterisedSystem< std::vector< double > > | |
GetSlowValues(std::vector< double > &rSlowValues) | AbstractCardiacCell | [virtual] |
GetSolver() const | AbstractCardiacCellInterface | |
GetStateVariable(unsigned index) const | AbstractParameterisedSystem< std::vector< double > > | |
GetStateVariableIndex(const std::string &rName) const | AbstractParameterisedSystem< std::vector< double > > | |
GetStateVariableUnits(unsigned index) const | AbstractParameterisedSystem< std::vector< double > > | |
GetStimulus(double time) | AbstractCardiacCellInterface | |
GetStimulusFunction() | AbstractCardiacCellInterface | |
GetStimulusFunction() const | AbstractCardiacCellInterface | |
GetSystemInformation() const | AbstractParameterisedSystem< std::vector< double > > | |
GetSystemName() const | AbstractParameterisedSystem< std::vector< double > > | |
GetUseAnalyticJacobian() | AbstractOdeSystem | |
GetVoltage() | AbstractCardiacCell | [virtual] |
GetVoltageIndex() | AbstractCardiacCellInterface | |
HasCellMLDefaultStimulus() | AbstractCardiacCellInterface | |
Init() | AbstractCardiacCell | |
IsFastOnly() | AbstractCardiacCell | [virtual] |
mDt | AbstractCardiacCell | [protected] |
mHasDefaultStimulusFromCellML | AbstractCardiacCellInterface | [protected] |
mIsUsedInTissue | AbstractCardiacCellInterface | [protected] |
mNumberOfStateVariables | AbstractParameterisedSystem< std::vector< double > > | [protected] |
mParameters | AbstractParameterisedSystem< std::vector< double > > | [protected] |
mpIntracellularStimulus | AbstractCardiacCellInterface | [protected] |
mpOdeSolver | AbstractCardiacCellInterface | [protected] |
mpSystemInfo | AbstractParameterisedSystem< std::vector< double > > | [protected] |
mSetVoltageDerivativeToZero | AbstractCardiacCellInterface | [protected] |
mStateVariables | AbstractParameterisedSystem< std::vector< double > > | [protected] |
mUseAnalyticJacobian | AbstractOdeSystem | [protected] |
mVoltageIndex | AbstractCardiacCellInterface | [protected] |
ResetToInitialConditions() | AbstractCardiacCell | [virtual] |
rGetConstStateVariables() const | AbstractOdeSystem | |
rGetDerivedQuantityNames() const | AbstractParameterisedSystem< std::vector< double > > | |
rGetDerivedQuantityUnits() const | AbstractParameterisedSystem< std::vector< double > > | |
rGetParameterNames() const | AbstractParameterisedSystem< std::vector< double > > | |
rGetParameterUnits() const | AbstractParameterisedSystem< std::vector< double > > | |
rGetStateVariableNames() const | AbstractParameterisedSystem< std::vector< double > > | |
rGetStateVariables() | AbstractParameterisedSystem< std::vector< double > > | |
rGetStateVariableUnits() const | AbstractParameterisedSystem< std::vector< double > > | |
serialize(Archive &archive, const unsigned int version) | FakeBathCell | [inline, private] |
SetDefaultInitialCondition(unsigned index, double initialCondition) | AbstractOdeSystem | |
SetDefaultInitialConditions(const std::vector< double > &rInitialConditions) | AbstractOdeSystem | |
SetIntracellularStimulusFunction(boost::shared_ptr< AbstractStimulusFunction > pStimulus) | AbstractCardiacCellInterface | |
SetParameter(const std::string &rName, double value) | AbstractParameterisedSystem< std::vector< double > > | |
SetParameter(unsigned index, double value) | AbstractParameterisedSystem< std::vector< double > > | |
SetSlowValues(const std::vector< double > &rSlowValues) | AbstractCardiacCell | [virtual] |
SetState(CellModelState state) | AbstractCardiacCell | [virtual] |
SetStateVariable(unsigned index, double newValue) | AbstractParameterisedSystem< std::vector< double > > | |
SetStateVariables(const std::vector< double > &rStateVariables) | AbstractOdeSystem | |
SetStimulusFunction(boost::shared_ptr< AbstractStimulusFunction > pStimulus) | AbstractCardiacCellInterface | |
SetStretch(double stretch) | AbstractCardiacCell | [inline, virtual] |
SetUsedInTissueSimulation(bool tissue=true) | AbstractCardiacCellInterface | |
SetVoltage(double voltage) | AbstractCardiacCell | [virtual] |
UseCellMLDefaultStimulus() | AbstractCardiacCellInterface | [virtual] |
VerifyStateVariables() | AbstractCardiacCell | [inline, virtual] |
~AbstractCardiacCell() | AbstractCardiacCell | [virtual] |
~AbstractCardiacCellInterface() | AbstractCardiacCellInterface | [virtual] |
~AbstractOdeSystem() | AbstractOdeSystem | [virtual] |
~AbstractParameterisedSystem() | AbstractParameterisedSystem< std::vector< double > > | [virtual] |
~FakeBathCell() | FakeBathCell | |