MeshBasedCellPopulationWithGhostNodes< DIM > Member List

This is the complete list of members for MeshBasedCellPopulationWithGhostNodes< DIM >, including all inherited members.

AbstractCellPopulation()AbstractCellPopulation< DIM > [inline, protected]
AbstractCellPopulation(std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >())AbstractCellPopulation< DIM > [inline]
AbstractCentreBasedCellPopulation()AbstractCentreBasedCellPopulation< DIM > [inline, protected]
AbstractCentreBasedCellPopulation(std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >())AbstractCentreBasedCellPopulation< DIM > [inline]
AddCell(CellPtr pNewCell, const c_vector< double, DIM > &rCellDivisionVector, CellPtr pParentCell)MeshBasedCellPopulationWithGhostNodes< DIM > [inline, virtual]
AddNode(Node< DIM > *pNewNode)MeshBasedCellPopulation< DIM > [inline, virtual]
Begin()AbstractCellPopulation< DIM > [inline]
boost::serialization::access classMeshBasedCellPopulationWithGhostNodes< DIM > [friend]
CalculateForceBetweenGhostNodes(const unsigned &rNodeAGlobalIndex, const unsigned &rNodeBGlobalIndex)MeshBasedCellPopulationWithGhostNodes< DIM > [inline]
CheckCellPointers()MeshBasedCellPopulation< DIM > [inline]
CloseOutputFiles()MeshBasedCellPopulation< DIM > [inline, virtual]
CreateCellPair(CellPtr pCell1, CellPtr pCell2)MeshBasedCellPopulation< DIM > [inline]
CreateOutputFiles(const std::string &rDirectory, bool cleanOutputDirectory)MeshBasedCellPopulation< DIM > [inline, virtual]
CreateVoronoiTessellation()MeshBasedCellPopulation< DIM >
CreateVoronoiTessellation()MeshBasedCellPopulation< DIM > [inline]
End()AbstractCellPopulation< DIM > [inline]
GenerateCellResults(unsigned locationIndex, std::vector< unsigned > &rCellProliferativeTypeCounter, std::vector< unsigned > &rCellCyclePhaseCounter)AbstractCentreBasedCellPopulation< DIM > [inline, virtual]
GenerateCellResultsAndWriteToFiles()AbstractCentreBasedCellPopulation< DIM > [inline, virtual]
GetAreaBasedDampingConstantParameter()MeshBasedCellPopulation< DIM > [inline]
GetCellAncestors()AbstractCellPopulation< DIM > [inline]
GetCellMutationStateCount()AbstractCellPopulation< DIM > [inline]
GetCellPropertyRegistry()AbstractCellPopulation< DIM > [inline]
GetCellUsingLocationIndex(unsigned index)AbstractCellPopulation< DIM > [inline]
GetDampingConstant(unsigned nodeIndex)MeshBasedCellPopulation< DIM > [inline, virtual]
GetDampingConstantMutant()AbstractCellPopulation< DIM > [inline]
GetDampingConstantNormal()AbstractCellPopulation< DIM > [inline]
GetGhostNodeIndices()MeshBasedCellPopulationWithGhostNodes< DIM > [inline]
GetIdentifier() const Identifiable
GetLocationIndexUsingCell(CellPtr pCell)AbstractCellPopulation< DIM > [inline]
GetLocationOfCellCentre(CellPtr pCell)AbstractCentreBasedCellPopulation< DIM > [inline, virtual]
GetMeinekeDivisionSeparation()AbstractCentreBasedCellPopulation< DIM > [inline]
GetNode(unsigned index)MeshBasedCellPopulation< DIM > [inline, virtual]
GetNodeCorrespondingToCell(CellPtr pCell)AbstractCentreBasedCellPopulation< DIM > [inline]
GetNumNodes()MeshBasedCellPopulation< DIM > [inline, virtual]
GetNumRealCells()AbstractCellPopulation< DIM > [inline]
GetOutputCellAges()AbstractCellPopulation< DIM > [inline]
GetOutputCellAncestors()AbstractCellPopulation< DIM > [inline]
GetOutputCellCyclePhases()AbstractCellPopulation< DIM > [inline]
GetOutputCellIdData()AbstractCellPopulation< DIM > [inline]
GetOutputCellMutationStates()AbstractCellPopulation< DIM > [inline]
GetOutputCellPopulationVolumes()MeshBasedCellPopulation< DIM > [inline]
GetOutputCellProliferativeTypes()AbstractCellPopulation< DIM > [inline]
GetOutputCellVariables()AbstractCellPopulation< DIM > [inline]
GetOutputCellVolumes()AbstractCellPopulation< DIM > [inline]
GetOutputVoronoiData()MeshBasedCellPopulation< DIM > [inline]
GetSurfaceAreaOfVoronoiElement(unsigned index)MeshBasedCellPopulation< DIM > [inline]
GetVolumeOfVoronoiElement(unsigned index)MeshBasedCellPopulation< DIM > [inline]
GetVoronoiEdgeLength(unsigned index1, unsigned index2)MeshBasedCellPopulation< DIM > [inline]
GetVoronoiTessellation()MeshBasedCellPopulation< DIM > [inline]
GetWidth(const unsigned &rDimension)MeshBasedCellPopulation< DIM > [inline, virtual]
InitialiseCells()AbstractCellPopulation< DIM > [inline]
IsCellAssociatedWithADeletedLocation(CellPtr pCell)AbstractCentreBasedCellPopulation< DIM > [inline, virtual]
IsGhostNode(unsigned index)MeshBasedCellPopulationWithGhostNodes< DIM > [inline, virtual]
IsMarkedSpring(const std::pair< CellPtr, CellPtr > &rCellPair)MeshBasedCellPopulation< DIM > [inline]
IsMeshBasedCellPopulation()AbstractCellPopulation< DIM > [inline]
mAreaBasedDampingConstantParameterMeshBasedCellPopulation< DIM > [protected]
MarkSpring(std::pair< CellPtr, CellPtr > &rCellPair)MeshBasedCellPopulation< DIM > [inline]
mCellCyclePhaseCountAbstractCellPopulation< DIM > [protected]
mCellLocationMapAbstractCellPopulation< DIM > [protected]
mCellPopulationContainsMeshAbstractCellPopulation< DIM > [protected]
mCellProliferativeTypeCountAbstractCellPopulation< DIM > [protected]
mCellsAbstractCellPopulation< DIM > [protected]
mDampingConstantMutantAbstractCellPopulation< DIM > [protected]
mDampingConstantNormalAbstractCellPopulation< DIM > [protected]
mDeleteMeshMeshBasedCellPopulation< DIM > [protected]
mDirPathMeshBasedCellPopulation< DIM > [protected]
MeshBasedCellPopulation(MutableMesh< DIM, DIM > &rMesh, std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >(), bool deleteMesh=false, bool validate=true)MeshBasedCellPopulation< DIM > [inline]
MeshBasedCellPopulation(MutableMesh< DIM, DIM > &rMesh)MeshBasedCellPopulation< DIM > [inline]
MeshBasedCellPopulationWithGhostNodes(MutableMesh< DIM, DIM > &rMesh, std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >(), bool deleteMesh=false, double ghostSpringStiffness=15.0)MeshBasedCellPopulationWithGhostNodes< DIM > [inline]
MeshBasedCellPopulationWithGhostNodes(MutableMesh< DIM, DIM > &rMesh, double ghostSpringStiffness=15.0)MeshBasedCellPopulationWithGhostNodes< DIM > [inline]
mGhostSpringStiffnessMeshBasedCellPopulationWithGhostNodes< DIM > [private]
mIsGhostNodeMeshBasedCellPopulationWithGhostNodes< DIM > [private]
mLocationCellMapAbstractCellPopulation< DIM > [protected]
mMarkedSpringsMeshBasedCellPopulation< DIM > [protected]
mMeinekeDivisionSeparationAbstractCentreBasedCellPopulation< DIM > [protected]
mOutputCellAgesAbstractCellPopulation< DIM > [protected]
mOutputCellAncestorsAbstractCellPopulation< DIM > [protected]
mOutputCellCyclePhasesAbstractCellPopulation< DIM > [protected]
mOutputCellIdDataAbstractCellPopulation< DIM > [protected]
mOutputCellMutationStatesAbstractCellPopulation< DIM > [protected]
mOutputCellPopulationVolumesMeshBasedCellPopulation< DIM > [protected]
mOutputCellProliferativeTypesAbstractCellPopulation< DIM > [protected]
mOutputCellVariablesAbstractCellPopulation< DIM > [protected]
mOutputCellVolumesAbstractCellPopulation< DIM > [protected]
mOutputVoronoiDataMeshBasedCellPopulation< DIM > [protected]
mpCellAgesFileAbstractCellPopulation< DIM > [protected]
mpCellCyclePhasesFileAbstractCellPopulation< DIM > [protected]
mpCellIdFileAbstractCellPopulation< DIM > [protected]
mpCellMutationStatesFileAbstractCellPopulation< DIM > [protected]
mpCellPopulationVolumesFileMeshBasedCellPopulation< DIM > [protected]
mpCellProliferativeTypesFileAbstractCellPopulation< DIM > [protected]
mpCellPropertyRegistryAbstractCellPopulation< DIM > [protected]
mpCellVariablesFileAbstractCellPopulation< DIM > [protected]
mpCellVolumesFileMeshBasedCellPopulation< DIM > [protected]
mpVizBoundaryNodesFileAbstractCellPopulation< DIM > [protected]
mpVizCellAncestorsFileAbstractCellPopulation< DIM > [protected]
mpVizCellProliferativeTypesFileAbstractCellPopulation< DIM > [protected]
mpVizElementsFileMeshBasedCellPopulation< DIM > [protected]
mpVizNodesFileAbstractCellPopulation< DIM > [protected]
mpVoronoiFileMeshBasedCellPopulation< DIM > [protected]
mpVoronoiTessellationMeshBasedCellPopulation< DIM > [protected]
mpVtkMetaFileMeshBasedCellPopulation< DIM > [protected]
mrMeshMeshBasedCellPopulation< DIM > [protected]
mUseAreaBasedDampingConstantMeshBasedCellPopulation< DIM > [protected]
OutputCellPopulationInfo(out_stream &rParamsFile)AbstractCellPopulation< DIM > [inline]
OutputCellPopulationParameters(out_stream &rParamsFile)MeshBasedCellPopulationWithGhostNodes< DIM > [inline, virtual]
RemoveDeadCells()MeshBasedCellPopulation< DIM > [inline, virtual]
rGetCellCyclePhaseCount() const AbstractCellPopulation< DIM > [inline]
rGetCellProliferativeTypeCount() const AbstractCellPopulation< DIM > [inline]
rGetCells()AbstractCellPopulation< DIM > [inline]
rGetGhostNodes()MeshBasedCellPopulationWithGhostNodes< DIM > [inline]
rGetMesh()MeshBasedCellPopulation< DIM > [inline]
rGetMesh() const MeshBasedCellPopulation< DIM > [inline]
serialize(Archive &archive, const unsigned int version)MeshBasedCellPopulationWithGhostNodes< DIM > [inline, private]
SetAreaBasedDampingConstant(bool useAreaBasedDampingConstant)MeshBasedCellPopulation< DIM > [inline]
SetAreaBasedDampingConstantParameter(double areaBasedDampingConstantParameter)MeshBasedCellPopulation< DIM > [inline]
SetCellAncestorsToLocationIndices()AbstractCellPopulation< DIM > [inline]
SetDampingConstantMutant(double dampingConstantMutant)AbstractCellPopulation< DIM > [inline]
SetDampingConstantNormal(double dampingConstantNormal)AbstractCellPopulation< DIM > [inline]
SetDefaultMutationStateOrdering()AbstractCellPopulation< DIM > [inline]
SetGhostNodes(const std::set< unsigned > &rGhostNodeIndices)MeshBasedCellPopulationWithGhostNodes< DIM > [inline, private]
SetMeinekeDivisionSeparation(double divisionSeparation)AbstractCentreBasedCellPopulation< DIM > [inline]
SetNode(unsigned nodeIndex, ChastePoint< DIM > &rNewLocation)MeshBasedCellPopulation< DIM > [inline, virtual]
SetOutputCellAges(bool outputCellAges)AbstractCellPopulation< DIM > [inline]
SetOutputCellAncestors(bool outputCellAncestors)AbstractCellPopulation< DIM > [inline]
SetOutputCellCyclePhases(bool outputCellCyclePhases)AbstractCellPopulation< DIM > [inline]
SetOutputCellIdData(bool outputCellIdData)AbstractCellPopulation< DIM > [inline]
SetOutputCellMutationStates(bool outputCellMutationStates)AbstractCellPopulation< DIM > [inline]
SetOutputCellPopulationVolumes(bool outputCellPopulationVolumes)MeshBasedCellPopulation< DIM > [inline]
SetOutputCellProliferativeTypes(bool outputCellProliferativeTypes)AbstractCellPopulation< DIM > [inline]
SetOutputCellVariables(bool outputCellVariables)AbstractCellPopulation< DIM > [inline]
SetOutputCellVolumes(bool outputCellVolumes)AbstractCellPopulation< DIM > [inline]
SetOutputVoronoiData(bool outputVoronoiData)MeshBasedCellPopulation< DIM > [inline]
SpringsBegin()MeshBasedCellPopulation< DIM > [inline]
SpringsEnd()MeshBasedCellPopulation< DIM > [inline]
TestMeshBasedCellPopulationWithGhostNodes classMeshBasedCellPopulationWithGhostNodes< DIM > [friend]
UnmarkSpring(std::pair< CellPtr, CellPtr > &rCellPair)MeshBasedCellPopulation< DIM > [inline]
Update(bool hasHadBirthsOrDeaths=true)MeshBasedCellPopulation< DIM > [inline, virtual]
UpdateGhostNodesAfterReMesh(NodeMap &rMap)MeshBasedCellPopulationWithGhostNodes< DIM > [inline, virtual]
UpdateGhostPositions(double dt)MeshBasedCellPopulationWithGhostNodes< DIM > [inline]
UpdateNodeLocations(const std::vector< c_vector< double, DIM > > &rNodeForces, double dt)MeshBasedCellPopulationWithGhostNodes< DIM > [inline, virtual]
UseAreaBasedDampingConstant()MeshBasedCellPopulation< DIM > [inline]
Validate()MeshBasedCellPopulationWithGhostNodes< DIM > [inline, private, virtual]
WriteCellIdDataToFile()AbstractCellPopulation< DIM > [inline]
WriteCellPopulationVolumeResultsToFile()MeshBasedCellPopulation< DIM > [inline]
WriteCellResultsToFiles(std::vector< unsigned > &rCellProliferativeTypeCounter, std::vector< unsigned > &rCellCyclePhaseCounter)AbstractCellPopulation< DIM > [inline]
WriteCellVolumeResultsToFile()MeshBasedCellPopulation< DIM > [inline]
WriteResultsToFiles()MeshBasedCellPopulation< DIM > [inline, virtual]
WriteTimeAndNodeResultsToFiles()AbstractCentreBasedCellPopulation< DIM > [inline, virtual]
WriteVoronoiResultsToFile()MeshBasedCellPopulation< DIM > [inline]
WriteVtkResultsToFile()MeshBasedCellPopulationWithGhostNodes< DIM > [inline, virtual]
~AbstractCellPopulation()AbstractCellPopulation< DIM > [inline, virtual]
~Identifiable()Identifiable [virtual]
~MeshBasedCellPopulation()MeshBasedCellPopulation< DIM > [inline]


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