, including all inherited members.
| AbstractCellPopulation() | AbstractCellPopulation< DIM > | [inline, protected] |
| AbstractCellPopulation(std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >()) | AbstractCellPopulation< DIM > | [inline] |
| AbstractCentreBasedCellPopulation() | AbstractCentreBasedCellPopulation< DIM > | [inline, protected] |
| AbstractCentreBasedCellPopulation(std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >()) | AbstractCentreBasedCellPopulation< DIM > | [inline] |
| AddCell(CellPtr pNewCell, const c_vector< double, DIM > &rCellDivisionVector, CellPtr pParentCell=CellPtr()) | AbstractCentreBasedCellPopulation< DIM > | [inline, virtual] |
| AddNode(Node< DIM > *pNewNode) | NodeBasedCellPopulation< DIM > | [inline, private, virtual] |
| Begin() | AbstractCellPopulation< DIM > | [inline] |
| boost::serialization::access class | NodeBasedCellPopulation< DIM > | [friend] |
| Clear() | NodeBasedCellPopulation< DIM > | [inline] |
| CloseOutputFiles() | AbstractCellPopulation< DIM > | [inline, virtual] |
| CreateOutputFiles(const std::string &rDirectory, bool cleanOutputDirectory) | AbstractCellPopulation< DIM > | [inline, virtual] |
| End() | AbstractCellPopulation< DIM > | [inline] |
| FindMaxAndMin() | NodeBasedCellPopulation< DIM > | [inline, private] |
| GenerateCellResults(unsigned locationIndex, std::vector< unsigned > &rCellProliferativeTypeCounter, std::vector< unsigned > &rCellCyclePhaseCounter) | AbstractCentreBasedCellPopulation< DIM > | [inline, virtual] |
| GenerateCellResultsAndWriteToFiles() | AbstractCentreBasedCellPopulation< DIM > | [inline, virtual] |
| GetBoxCollection() | NodeBasedCellPopulation< DIM > | [inline] |
| GetCellAncestors() | AbstractCellPopulation< DIM > | [inline] |
| GetCellMutationStateCount() | AbstractCellPopulation< DIM > | [inline] |
| GetCellPropertyRegistry() | AbstractCellPopulation< DIM > | [inline] |
| GetCellUsingLocationIndex(unsigned index) | AbstractCellPopulation< DIM > | [inline] |
| GetDampingConstant(unsigned nodeIndex) | AbstractCentreBasedCellPopulation< DIM > | [inline, virtual] |
| GetDampingConstantMutant() | AbstractCellPopulation< DIM > | [inline] |
| GetDampingConstantNormal() | AbstractCellPopulation< DIM > | [inline] |
| GetIdentifier() const | Identifiable | |
| GetLocationIndexUsingCell(CellPtr pCell) | AbstractCellPopulation< DIM > | [inline] |
| GetLocationOfCellCentre(CellPtr pCell) | AbstractCentreBasedCellPopulation< DIM > | [inline, virtual] |
| GetMechanicsCutOffLength() | NodeBasedCellPopulation< DIM > | [inline] |
| GetMeinekeDivisionSeparation() | AbstractCentreBasedCellPopulation< DIM > | [inline] |
| GetNode(unsigned index) | NodeBasedCellPopulation< DIM > | [inline, virtual] |
| GetNodeCorrespondingToCell(CellPtr pCell) | AbstractCentreBasedCellPopulation< DIM > | [inline] |
| GetNumNodes() | NodeBasedCellPopulation< DIM > | [inline, virtual] |
| GetNumRealCells() | AbstractCellPopulation< DIM > | [inline] |
| GetOutputCellAges() | AbstractCellPopulation< DIM > | [inline] |
| GetOutputCellAncestors() | AbstractCellPopulation< DIM > | [inline] |
| GetOutputCellCyclePhases() | AbstractCellPopulation< DIM > | [inline] |
| GetOutputCellIdData() | AbstractCellPopulation< DIM > | [inline] |
| GetOutputCellMutationStates() | AbstractCellPopulation< DIM > | [inline] |
| GetOutputCellProliferativeTypes() | AbstractCellPopulation< DIM > | [inline] |
| GetOutputCellVariables() | AbstractCellPopulation< DIM > | [inline] |
| GetOutputCellVolumes() | AbstractCellPopulation< DIM > | [inline] |
| GetWidth(const unsigned &rDimension) | NodeBasedCellPopulation< DIM > | [inline, virtual] |
| InitialiseCells() | AbstractCellPopulation< DIM > | [inline] |
| IsCellAssociatedWithADeletedLocation(CellPtr pCell) | AbstractCentreBasedCellPopulation< DIM > | [inline, virtual] |
| IsGhostNode(unsigned index) | AbstractCentreBasedCellPopulation< DIM > | [inline, virtual] |
| IsMeshBasedCellPopulation() | AbstractCellPopulation< DIM > | [inline] |
| mAddedNodes | NodeBasedCellPopulation< DIM > | [protected] |
| mCellCyclePhaseCount | AbstractCellPopulation< DIM > | [protected] |
| mCellLocationMap | AbstractCellPopulation< DIM > | [protected] |
| mCellPopulationContainsMesh | AbstractCellPopulation< DIM > | [protected] |
| mCellProliferativeTypeCount | AbstractCellPopulation< DIM > | [protected] |
| mCells | AbstractCellPopulation< DIM > | [protected] |
| mDampingConstantMutant | AbstractCellPopulation< DIM > | [protected] |
| mDampingConstantNormal | AbstractCellPopulation< DIM > | [protected] |
| mDeletedNodeIndices | NodeBasedCellPopulation< DIM > | [protected] |
| mDeleteNodes | NodeBasedCellPopulation< DIM > | [private] |
| mLocationCellMap | AbstractCellPopulation< DIM > | [protected] |
| mMaxSpatialPositions | NodeBasedCellPopulation< DIM > | [private] |
| mMechanicsCutOffLength | NodeBasedCellPopulation< DIM > | [private] |
| mMeinekeDivisionSeparation | AbstractCentreBasedCellPopulation< DIM > | [protected] |
| mMinSpatialPositions | NodeBasedCellPopulation< DIM > | [private] |
| mNodePairs | NodeBasedCellPopulation< DIM > | [private] |
| mNodes | NodeBasedCellPopulation< DIM > | [protected] |
| mOutputCellAges | AbstractCellPopulation< DIM > | [protected] |
| mOutputCellAncestors | AbstractCellPopulation< DIM > | [protected] |
| mOutputCellCyclePhases | AbstractCellPopulation< DIM > | [protected] |
| mOutputCellIdData | AbstractCellPopulation< DIM > | [protected] |
| mOutputCellMutationStates | AbstractCellPopulation< DIM > | [protected] |
| mOutputCellProliferativeTypes | AbstractCellPopulation< DIM > | [protected] |
| mOutputCellVariables | AbstractCellPopulation< DIM > | [protected] |
| mOutputCellVolumes | AbstractCellPopulation< DIM > | [protected] |
| mpBoxCollection | NodeBasedCellPopulation< DIM > | [private] |
| mpCellAgesFile | AbstractCellPopulation< DIM > | [protected] |
| mpCellCyclePhasesFile | AbstractCellPopulation< DIM > | [protected] |
| mpCellIdFile | AbstractCellPopulation< DIM > | [protected] |
| mpCellMutationStatesFile | AbstractCellPopulation< DIM > | [protected] |
| mpCellProliferativeTypesFile | AbstractCellPopulation< DIM > | [protected] |
| mpCellPropertyRegistry | AbstractCellPopulation< DIM > | [protected] |
| mpCellVariablesFile | AbstractCellPopulation< DIM > | [protected] |
| mpVizBoundaryNodesFile | AbstractCellPopulation< DIM > | [protected] |
| mpVizCellAncestorsFile | AbstractCellPopulation< DIM > | [protected] |
| mpVizCellProliferativeTypesFile | AbstractCellPopulation< DIM > | [protected] |
| mpVizNodesFile | AbstractCellPopulation< DIM > | [protected] |
| NodeBasedCellPopulation(const std::vector< Node< DIM > * > nodes, std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >(), bool deleteNodes=true) | NodeBasedCellPopulation< DIM > | [inline] |
| NodeBasedCellPopulation(const std::vector< Node< DIM > * > nodes, double mechanicsCutOffLength, bool deleteNodes=true) | NodeBasedCellPopulation< DIM > | [inline] |
| NodeBasedCellPopulation(const AbstractMesh< DIM, DIM > &rMesh, std::vector< CellPtr > &rCells) | NodeBasedCellPopulation< DIM > | [inline] |
| OutputCellPopulationInfo(out_stream &rParamsFile) | AbstractCellPopulation< DIM > | [inline] |
| OutputCellPopulationParameters(out_stream &rParamsFile) | NodeBasedCellPopulation< DIM > | [inline, virtual] |
| RemoveDeadCells() | NodeBasedCellPopulation< DIM > | [inline, virtual] |
| rGetCellCyclePhaseCount() const | AbstractCellPopulation< DIM > | [inline] |
| rGetCellProliferativeTypeCount() const | AbstractCellPopulation< DIM > | [inline] |
| rGetCells() | AbstractCellPopulation< DIM > | [inline] |
| rGetNodePairs() | NodeBasedCellPopulation< DIM > | [inline] |
| rGetNodes() | NodeBasedCellPopulation< DIM > | [inline] |
| rGetNodes() const | NodeBasedCellPopulation< DIM > | [inline] |
| serialize(Archive &archive, const unsigned int version) | NodeBasedCellPopulation< DIM > | [inline, private] |
| SetCellAncestorsToLocationIndices() | AbstractCellPopulation< DIM > | [inline] |
| SetDampingConstantMutant(double dampingConstantMutant) | AbstractCellPopulation< DIM > | [inline] |
| SetDampingConstantNormal(double dampingConstantNormal) | AbstractCellPopulation< DIM > | [inline] |
| SetDefaultMutationStateOrdering() | AbstractCellPopulation< DIM > | [inline] |
| SetMechanicsCutOffLength(double mechanicsCutOffLength) | NodeBasedCellPopulation< DIM > | [inline] |
| SetMeinekeDivisionSeparation(double divisionSeparation) | AbstractCentreBasedCellPopulation< DIM > | [inline] |
| SetNode(unsigned nodeIndex, ChastePoint< DIM > &rNewLocation) | NodeBasedCellPopulation< DIM > | [inline, private, virtual] |
| SetOutputCellAges(bool outputCellAges) | AbstractCellPopulation< DIM > | [inline] |
| SetOutputCellAncestors(bool outputCellAncestors) | AbstractCellPopulation< DIM > | [inline] |
| SetOutputCellCyclePhases(bool outputCellCyclePhases) | AbstractCellPopulation< DIM > | [inline] |
| SetOutputCellIdData(bool outputCellIdData) | AbstractCellPopulation< DIM > | [inline] |
| SetOutputCellMutationStates(bool outputCellMutationStates) | AbstractCellPopulation< DIM > | [inline] |
| SetOutputCellProliferativeTypes(bool outputCellProliferativeTypes) | AbstractCellPopulation< DIM > | [inline] |
| SetOutputCellVariables(bool outputCellVariables) | AbstractCellPopulation< DIM > | [inline] |
| SetOutputCellVolumes(bool outputCellVolumes) | AbstractCellPopulation< DIM > | [inline] |
| SplitUpIntoBoxes(double cutOffLength, c_vector< double, 2 *DIM > domainSize) | NodeBasedCellPopulation< DIM > | [inline, private] |
| TestBoxCollection (defined in NodeBasedCellPopulation< DIM >) | NodeBasedCellPopulation< DIM > | [friend] |
| TestNodeBasedCellPopulation (defined in NodeBasedCellPopulation< DIM >) | NodeBasedCellPopulation< DIM > | [friend] |
| Update(bool hasHadBirthsOrDeaths=true) | NodeBasedCellPopulation< DIM > | [inline, virtual] |
| UpdateNodeLocations(const std::vector< c_vector< double, DIM > > &rNodeForces, double dt) | AbstractCentreBasedCellPopulation< DIM > | [inline, virtual] |
| Validate() | NodeBasedCellPopulation< DIM > | [inline, private, virtual] |
| WriteCellIdDataToFile() | AbstractCellPopulation< DIM > | [inline] |
| WriteCellResultsToFiles(std::vector< unsigned > &rCellProliferativeTypeCounter, std::vector< unsigned > &rCellCyclePhaseCounter) | AbstractCellPopulation< DIM > | [inline] |
| WriteResultsToFiles() | AbstractCellPopulation< DIM > | [inline, virtual] |
| WriteTimeAndNodeResultsToFiles() | AbstractCentreBasedCellPopulation< DIM > | [inline, virtual] |
| ~AbstractCellPopulation() | AbstractCellPopulation< DIM > | [inline, virtual] |
| ~Identifiable() | Identifiable | [virtual] |
| ~NodeBasedCellPopulation() | NodeBasedCellPopulation< DIM > | [inline] |
