NodeBasedCellPopulation< DIM > Member List

This is the complete list of members for NodeBasedCellPopulation< DIM >, including all inherited members.

AbstractCellPopulation()AbstractCellPopulation< DIM > [inline, protected]
AbstractCellPopulation(std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >())AbstractCellPopulation< DIM > [inline]
AbstractCentreBasedCellPopulation()AbstractCentreBasedCellPopulation< DIM > [inline, protected]
AbstractCentreBasedCellPopulation(std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >())AbstractCentreBasedCellPopulation< DIM > [inline]
AddCell(CellPtr pNewCell, const c_vector< double, DIM > &rCellDivisionVector, CellPtr pParentCell=CellPtr())AbstractCentreBasedCellPopulation< DIM > [inline, virtual]
AddNode(Node< DIM > *pNewNode)NodeBasedCellPopulation< DIM > [inline, private, virtual]
Begin()AbstractCellPopulation< DIM > [inline]
boost::serialization::access classNodeBasedCellPopulation< DIM > [friend]
Clear()NodeBasedCellPopulation< DIM > [inline]
CloseOutputFiles()AbstractCellPopulation< DIM > [inline, virtual]
CreateOutputFiles(const std::string &rDirectory, bool cleanOutputDirectory)AbstractCellPopulation< DIM > [inline, virtual]
End()AbstractCellPopulation< DIM > [inline]
FindMaxAndMin()NodeBasedCellPopulation< DIM > [inline, private]
GenerateCellResults(unsigned locationIndex, std::vector< unsigned > &rCellProliferativeTypeCounter, std::vector< unsigned > &rCellCyclePhaseCounter)AbstractCentreBasedCellPopulation< DIM > [inline, virtual]
GenerateCellResultsAndWriteToFiles()AbstractCentreBasedCellPopulation< DIM > [inline, virtual]
GetBoxCollection()NodeBasedCellPopulation< DIM > [inline]
GetCellAncestors()AbstractCellPopulation< DIM > [inline]
GetCellMutationStateCount()AbstractCellPopulation< DIM > [inline]
GetCellPropertyRegistry()AbstractCellPopulation< DIM > [inline]
GetCellUsingLocationIndex(unsigned index)AbstractCellPopulation< DIM > [inline]
GetDampingConstant(unsigned nodeIndex)AbstractCentreBasedCellPopulation< DIM > [inline, virtual]
GetDampingConstantMutant()AbstractCellPopulation< DIM > [inline]
GetDampingConstantNormal()AbstractCellPopulation< DIM > [inline]
GetIdentifier() const Identifiable
GetLocationIndexUsingCell(CellPtr pCell)AbstractCellPopulation< DIM > [inline]
GetLocationOfCellCentre(CellPtr pCell)AbstractCentreBasedCellPopulation< DIM > [inline, virtual]
GetMechanicsCutOffLength()NodeBasedCellPopulation< DIM > [inline]
GetMeinekeDivisionSeparation()AbstractCentreBasedCellPopulation< DIM > [inline]
GetNode(unsigned index)NodeBasedCellPopulation< DIM > [inline, virtual]
GetNodeCorrespondingToCell(CellPtr pCell)AbstractCentreBasedCellPopulation< DIM > [inline]
GetNumNodes()NodeBasedCellPopulation< DIM > [inline, virtual]
GetNumRealCells()AbstractCellPopulation< DIM > [inline]
GetOutputCellAges()AbstractCellPopulation< DIM > [inline]
GetOutputCellAncestors()AbstractCellPopulation< DIM > [inline]
GetOutputCellCyclePhases()AbstractCellPopulation< DIM > [inline]
GetOutputCellIdData()AbstractCellPopulation< DIM > [inline]
GetOutputCellMutationStates()AbstractCellPopulation< DIM > [inline]
GetOutputCellProliferativeTypes()AbstractCellPopulation< DIM > [inline]
GetOutputCellVariables()AbstractCellPopulation< DIM > [inline]
GetOutputCellVolumes()AbstractCellPopulation< DIM > [inline]
GetWidth(const unsigned &rDimension)NodeBasedCellPopulation< DIM > [inline, virtual]
InitialiseCells()AbstractCellPopulation< DIM > [inline]
IsCellAssociatedWithADeletedLocation(CellPtr pCell)AbstractCentreBasedCellPopulation< DIM > [inline, virtual]
IsGhostNode(unsigned index)AbstractCentreBasedCellPopulation< DIM > [inline, virtual]
IsMeshBasedCellPopulation()AbstractCellPopulation< DIM > [inline]
mAddedNodesNodeBasedCellPopulation< DIM > [protected]
mCellCyclePhaseCountAbstractCellPopulation< DIM > [protected]
mCellLocationMapAbstractCellPopulation< DIM > [protected]
mCellPopulationContainsMeshAbstractCellPopulation< DIM > [protected]
mCellProliferativeTypeCountAbstractCellPopulation< DIM > [protected]
mCellsAbstractCellPopulation< DIM > [protected]
mDampingConstantMutantAbstractCellPopulation< DIM > [protected]
mDampingConstantNormalAbstractCellPopulation< DIM > [protected]
mDeletedNodeIndicesNodeBasedCellPopulation< DIM > [protected]
mDeleteNodesNodeBasedCellPopulation< DIM > [private]
mLocationCellMapAbstractCellPopulation< DIM > [protected]
mMaxSpatialPositionsNodeBasedCellPopulation< DIM > [private]
mMechanicsCutOffLengthNodeBasedCellPopulation< DIM > [private]
mMeinekeDivisionSeparationAbstractCentreBasedCellPopulation< DIM > [protected]
mMinSpatialPositionsNodeBasedCellPopulation< DIM > [private]
mNodePairsNodeBasedCellPopulation< DIM > [private]
mNodesNodeBasedCellPopulation< DIM > [protected]
mOutputCellAgesAbstractCellPopulation< DIM > [protected]
mOutputCellAncestorsAbstractCellPopulation< DIM > [protected]
mOutputCellCyclePhasesAbstractCellPopulation< DIM > [protected]
mOutputCellIdDataAbstractCellPopulation< DIM > [protected]
mOutputCellMutationStatesAbstractCellPopulation< DIM > [protected]
mOutputCellProliferativeTypesAbstractCellPopulation< DIM > [protected]
mOutputCellVariablesAbstractCellPopulation< DIM > [protected]
mOutputCellVolumesAbstractCellPopulation< DIM > [protected]
mpBoxCollectionNodeBasedCellPopulation< DIM > [private]
mpCellAgesFileAbstractCellPopulation< DIM > [protected]
mpCellCyclePhasesFileAbstractCellPopulation< DIM > [protected]
mpCellIdFileAbstractCellPopulation< DIM > [protected]
mpCellMutationStatesFileAbstractCellPopulation< DIM > [protected]
mpCellProliferativeTypesFileAbstractCellPopulation< DIM > [protected]
mpCellPropertyRegistryAbstractCellPopulation< DIM > [protected]
mpCellVariablesFileAbstractCellPopulation< DIM > [protected]
mpVizBoundaryNodesFileAbstractCellPopulation< DIM > [protected]
mpVizCellAncestorsFileAbstractCellPopulation< DIM > [protected]
mpVizCellProliferativeTypesFileAbstractCellPopulation< DIM > [protected]
mpVizNodesFileAbstractCellPopulation< DIM > [protected]
NodeBasedCellPopulation(const std::vector< Node< DIM > * > nodes, std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >(), bool deleteNodes=true)NodeBasedCellPopulation< DIM > [inline]
NodeBasedCellPopulation(const std::vector< Node< DIM > * > nodes, double mechanicsCutOffLength, bool deleteNodes=true)NodeBasedCellPopulation< DIM > [inline]
NodeBasedCellPopulation(const AbstractMesh< DIM, DIM > &rMesh, std::vector< CellPtr > &rCells)NodeBasedCellPopulation< DIM > [inline]
OutputCellPopulationInfo(out_stream &rParamsFile)AbstractCellPopulation< DIM > [inline]
OutputCellPopulationParameters(out_stream &rParamsFile)NodeBasedCellPopulation< DIM > [inline, virtual]
RemoveDeadCells()NodeBasedCellPopulation< DIM > [inline, virtual]
rGetCellCyclePhaseCount() const AbstractCellPopulation< DIM > [inline]
rGetCellProliferativeTypeCount() const AbstractCellPopulation< DIM > [inline]
rGetCells()AbstractCellPopulation< DIM > [inline]
rGetNodePairs()NodeBasedCellPopulation< DIM > [inline]
rGetNodes()NodeBasedCellPopulation< DIM > [inline]
rGetNodes() const NodeBasedCellPopulation< DIM > [inline]
serialize(Archive &archive, const unsigned int version)NodeBasedCellPopulation< DIM > [inline, private]
SetCellAncestorsToLocationIndices()AbstractCellPopulation< DIM > [inline]
SetDampingConstantMutant(double dampingConstantMutant)AbstractCellPopulation< DIM > [inline]
SetDampingConstantNormal(double dampingConstantNormal)AbstractCellPopulation< DIM > [inline]
SetDefaultMutationStateOrdering()AbstractCellPopulation< DIM > [inline]
SetMechanicsCutOffLength(double mechanicsCutOffLength)NodeBasedCellPopulation< DIM > [inline]
SetMeinekeDivisionSeparation(double divisionSeparation)AbstractCentreBasedCellPopulation< DIM > [inline]
SetNode(unsigned nodeIndex, ChastePoint< DIM > &rNewLocation)NodeBasedCellPopulation< DIM > [inline, private, virtual]
SetOutputCellAges(bool outputCellAges)AbstractCellPopulation< DIM > [inline]
SetOutputCellAncestors(bool outputCellAncestors)AbstractCellPopulation< DIM > [inline]
SetOutputCellCyclePhases(bool outputCellCyclePhases)AbstractCellPopulation< DIM > [inline]
SetOutputCellIdData(bool outputCellIdData)AbstractCellPopulation< DIM > [inline]
SetOutputCellMutationStates(bool outputCellMutationStates)AbstractCellPopulation< DIM > [inline]
SetOutputCellProliferativeTypes(bool outputCellProliferativeTypes)AbstractCellPopulation< DIM > [inline]
SetOutputCellVariables(bool outputCellVariables)AbstractCellPopulation< DIM > [inline]
SetOutputCellVolumes(bool outputCellVolumes)AbstractCellPopulation< DIM > [inline]
SplitUpIntoBoxes(double cutOffLength, c_vector< double, 2 *DIM > domainSize)NodeBasedCellPopulation< DIM > [inline, private]
TestBoxCollection (defined in NodeBasedCellPopulation< DIM >)NodeBasedCellPopulation< DIM > [friend]
TestNodeBasedCellPopulation (defined in NodeBasedCellPopulation< DIM >)NodeBasedCellPopulation< DIM > [friend]
Update(bool hasHadBirthsOrDeaths=true)NodeBasedCellPopulation< DIM > [inline, virtual]
UpdateNodeLocations(const std::vector< c_vector< double, DIM > > &rNodeForces, double dt)AbstractCentreBasedCellPopulation< DIM > [inline, virtual]
Validate()NodeBasedCellPopulation< DIM > [inline, private, virtual]
WriteCellIdDataToFile()AbstractCellPopulation< DIM > [inline]
WriteCellResultsToFiles(std::vector< unsigned > &rCellProliferativeTypeCounter, std::vector< unsigned > &rCellCyclePhaseCounter)AbstractCellPopulation< DIM > [inline]
WriteResultsToFiles()AbstractCellPopulation< DIM > [inline, virtual]
WriteTimeAndNodeResultsToFiles()AbstractCentreBasedCellPopulation< DIM > [inline, virtual]
~AbstractCellPopulation()AbstractCellPopulation< DIM > [inline, virtual]
~Identifiable()Identifiable [virtual]
~NodeBasedCellPopulation()NodeBasedCellPopulation< DIM > [inline]


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