, including all inherited members.
| AbstractCellPopulation() | AbstractCellPopulation< DIM > | [inline, protected] |
| AbstractCellPopulation(std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >()) | AbstractCellPopulation< DIM > | [inline] |
| AddCell(CellPtr pNewCell, const c_vector< double, DIM > &rCellDivisionVector, CellPtr pParentCell=CellPtr()) | VertexBasedCellPopulation< DIM > | [inline, virtual] |
| AddNode(Node< DIM > *pNewNode) | VertexBasedCellPopulation< DIM > | [inline, virtual] |
| Begin() | AbstractCellPopulation< DIM > | [inline] |
| boost::serialization::access class | VertexBasedCellPopulation< DIM > | [friend] |
| CloseOutputFiles() | VertexBasedCellPopulation< DIM > | [inline, virtual] |
| CreateOutputFiles(const std::string &rDirectory, bool cleanOutputDirectory) | VertexBasedCellPopulation< DIM > | [inline, virtual] |
| End() | AbstractCellPopulation< DIM > | [inline] |
| GenerateCellResults(unsigned locationIndex, std::vector< unsigned > &rCellProliferativeTypeCounter, std::vector< unsigned > &rCellCyclePhaseCounter) | AbstractCellPopulation< DIM > | [inline, virtual] |
| GenerateCellResultsAndWriteToFiles() | VertexBasedCellPopulation< DIM > | [inline, virtual] |
| GetCellAncestors() | AbstractCellPopulation< DIM > | [inline] |
| GetCellMutationStateCount() | AbstractCellPopulation< DIM > | [inline] |
| GetCellPropertyRegistry() | AbstractCellPopulation< DIM > | [inline] |
| GetCellUsingLocationIndex(unsigned index) | AbstractCellPopulation< DIM > | [inline] |
| GetDampingConstant(unsigned nodeIndex) | VertexBasedCellPopulation< DIM > | [inline, virtual] |
| GetDampingConstantMutant() | AbstractCellPopulation< DIM > | [inline] |
| GetDampingConstantNormal() | AbstractCellPopulation< DIM > | [inline] |
| GetElement(unsigned elementIndex) | VertexBasedCellPopulation< DIM > | [inline] |
| GetElementCorrespondingToCell(CellPtr pCell) | VertexBasedCellPopulation< DIM > | [inline] |
| GetIdentifier() const | Identifiable | |
| GetLocationIndexUsingCell(CellPtr pCell) | AbstractCellPopulation< DIM > | [inline] |
| GetLocationOfCellCentre(CellPtr pCell) | VertexBasedCellPopulation< DIM > | [inline, virtual] |
| GetNode(unsigned index) | VertexBasedCellPopulation< DIM > | [inline, virtual] |
| GetNumElements() | VertexBasedCellPopulation< DIM > | [inline] |
| GetNumNodes() | VertexBasedCellPopulation< DIM > | [inline, virtual] |
| GetNumRealCells() | AbstractCellPopulation< DIM > | [inline] |
| GetOutputCellAges() | AbstractCellPopulation< DIM > | [inline] |
| GetOutputCellAncestors() | AbstractCellPopulation< DIM > | [inline] |
| GetOutputCellCyclePhases() | AbstractCellPopulation< DIM > | [inline] |
| GetOutputCellIdData() | AbstractCellPopulation< DIM > | [inline] |
| GetOutputCellMutationStates() | AbstractCellPopulation< DIM > | [inline] |
| GetOutputCellProliferativeTypes() | AbstractCellPopulation< DIM > | [inline] |
| GetOutputCellVariables() | AbstractCellPopulation< DIM > | [inline] |
| GetOutputCellVolumes() | AbstractCellPopulation< DIM > | [inline] |
| GetWidth(const unsigned &rDimension) | VertexBasedCellPopulation< DIM > | [inline, virtual] |
| InitialiseCells() | AbstractCellPopulation< DIM > | [inline] |
| IsCellAssociatedWithADeletedLocation(CellPtr pCell) | VertexBasedCellPopulation< DIM > | [inline, virtual] |
| IsMeshBasedCellPopulation() | AbstractCellPopulation< DIM > | [inline] |
| mCellCyclePhaseCount | AbstractCellPopulation< DIM > | [protected] |
| mCellLocationMap | AbstractCellPopulation< DIM > | [protected] |
| mCellPopulationContainsMesh | AbstractCellPopulation< DIM > | [protected] |
| mCellProliferativeTypeCount | AbstractCellPopulation< DIM > | [protected] |
| mCells | AbstractCellPopulation< DIM > | [protected] |
| mDampingConstantMutant | AbstractCellPopulation< DIM > | [protected] |
| mDampingConstantNormal | AbstractCellPopulation< DIM > | [protected] |
| mDeleteMesh | VertexBasedCellPopulation< DIM > | [private] |
| mDirPath | VertexBasedCellPopulation< DIM > | [private] |
| mLocationCellMap | AbstractCellPopulation< DIM > | [protected] |
| mOutputCellAges | AbstractCellPopulation< DIM > | [protected] |
| mOutputCellAncestors | AbstractCellPopulation< DIM > | [protected] |
| mOutputCellCyclePhases | AbstractCellPopulation< DIM > | [protected] |
| mOutputCellIdData | AbstractCellPopulation< DIM > | [protected] |
| mOutputCellMutationStates | AbstractCellPopulation< DIM > | [protected] |
| mOutputCellProliferativeTypes | AbstractCellPopulation< DIM > | [protected] |
| mOutputCellVariables | AbstractCellPopulation< DIM > | [protected] |
| mOutputCellVolumes | AbstractCellPopulation< DIM > | [protected] |
| mpCellAgesFile | AbstractCellPopulation< DIM > | [protected] |
| mpCellCyclePhasesFile | AbstractCellPopulation< DIM > | [protected] |
| mpCellIdFile | AbstractCellPopulation< DIM > | [protected] |
| mpCellMutationStatesFile | AbstractCellPopulation< DIM > | [protected] |
| mpCellProliferativeTypesFile | AbstractCellPopulation< DIM > | [protected] |
| mpCellPropertyRegistry | AbstractCellPopulation< DIM > | [protected] |
| mpCellVariablesFile | AbstractCellPopulation< DIM > | [protected] |
| mpT1SwapLocationsFile | VertexBasedCellPopulation< DIM > | [private] |
| mpT3SwapLocationsFile | VertexBasedCellPopulation< DIM > | [private] |
| mpVizBoundaryNodesFile | AbstractCellPopulation< DIM > | [protected] |
| mpVizCellAncestorsFile | AbstractCellPopulation< DIM > | [protected] |
| mpVizCellProliferativeTypesFile | AbstractCellPopulation< DIM > | [protected] |
| mpVizElementsFile | VertexBasedCellPopulation< DIM > | [private] |
| mpVizNodesFile | AbstractCellPopulation< DIM > | [protected] |
| mpVtkMetaFile | VertexBasedCellPopulation< DIM > | [private] |
| mrMesh | VertexBasedCellPopulation< DIM > | [private] |
| OutputCellPopulationInfo(out_stream &rParamsFile) | AbstractCellPopulation< DIM > | [inline] |
| OutputCellPopulationParameters(out_stream &rParamsFile) | VertexBasedCellPopulation< DIM > | [inline, virtual] |
| RemoveDeadCells() | VertexBasedCellPopulation< DIM > | [inline, virtual] |
| rGetCellCyclePhaseCount() const | AbstractCellPopulation< DIM > | [inline] |
| rGetCellProliferativeTypeCount() const | AbstractCellPopulation< DIM > | [inline] |
| rGetCells() | AbstractCellPopulation< DIM > | [inline] |
| rGetMesh() | VertexBasedCellPopulation< DIM > | [inline] |
| rGetMesh() const | VertexBasedCellPopulation< DIM > | [inline] |
| serialize(Archive &archive, const unsigned int version) | VertexBasedCellPopulation< DIM > | [inline, private] |
| SetCellAncestorsToLocationIndices() | AbstractCellPopulation< DIM > | [inline] |
| SetDampingConstantMutant(double dampingConstantMutant) | AbstractCellPopulation< DIM > | [inline] |
| SetDampingConstantNormal(double dampingConstantNormal) | AbstractCellPopulation< DIM > | [inline] |
| SetDefaultMutationStateOrdering() | AbstractCellPopulation< DIM > | [inline] |
| SetNode(unsigned index, ChastePoint< DIM > &rNewLocation) | VertexBasedCellPopulation< DIM > | [inline, virtual] |
| SetOutputCellAges(bool outputCellAges) | AbstractCellPopulation< DIM > | [inline] |
| SetOutputCellAncestors(bool outputCellAncestors) | AbstractCellPopulation< DIM > | [inline] |
| SetOutputCellCyclePhases(bool outputCellCyclePhases) | AbstractCellPopulation< DIM > | [inline] |
| SetOutputCellIdData(bool outputCellIdData) | AbstractCellPopulation< DIM > | [inline] |
| SetOutputCellMutationStates(bool outputCellMutationStates) | AbstractCellPopulation< DIM > | [inline] |
| SetOutputCellProliferativeTypes(bool outputCellProliferativeTypes) | AbstractCellPopulation< DIM > | [inline] |
| SetOutputCellVariables(bool outputCellVariables) | AbstractCellPopulation< DIM > | [inline] |
| SetOutputCellVolumes(bool outputCellVolumes) | AbstractCellPopulation< DIM > | [inline] |
| Update(bool hasHadBirthsOrDeaths=true) | VertexBasedCellPopulation< DIM > | [inline, virtual] |
| UpdateNodeLocations(const std::vector< c_vector< double, DIM > > &rNodeForces, double dt) | VertexBasedCellPopulation< DIM > | [inline, virtual] |
| Validate() | VertexBasedCellPopulation< DIM > | [inline, private, virtual] |
| VertexBasedCellPopulation(MutableVertexMesh< DIM, DIM > &rMesh, std::vector< CellPtr > &rCells, bool deleteMesh=false, bool validate=true, const std::vector< unsigned > locationIndices=std::vector< unsigned >()) | VertexBasedCellPopulation< DIM > | [inline] |
| VertexBasedCellPopulation(MutableVertexMesh< DIM, DIM > &rMesh) | VertexBasedCellPopulation< DIM > | [inline] |
| WriteCellIdDataToFile() | AbstractCellPopulation< DIM > | [inline] |
| WriteCellResultsToFiles(std::vector< unsigned > &rCellProliferativeTypeCounter, std::vector< unsigned > &rCellCyclePhaseCounter) | AbstractCellPopulation< DIM > | [inline] |
| WriteResultsToFiles() | VertexBasedCellPopulation< DIM > | [inline, virtual] |
| WriteTimeAndNodeResultsToFiles() | AbstractCellPopulation< DIM > | [inline, virtual] |
| ~AbstractCellPopulation() | AbstractCellPopulation< DIM > | [inline, virtual] |
| ~Identifiable() | Identifiable | [virtual] |
| ~VertexBasedCellPopulation() | VertexBasedCellPopulation< DIM > | [inline, virtual] |
