, including all inherited members.
| AddCellKiller(AbstractCellKiller< DIM > *pCellKiller) | CellBasedSimulation< 2 > | |
| AddForce(AbstractForce< DIM > *pForce) | CellBasedSimulation< 2 > | |
| AfterSolve() | VertexCryptSimulation2d | [private, virtual] |
| ApplyCellPopulationBoundaryConditions(const std::vector< c_vector< double, 2 > > &rOldLocations) | VertexCryptSimulation2d | |
| CellBasedSimulation< 2 >::ApplyCellPopulationBoundaryConditions(const std::vector< c_vector< double, DIM > > &rOldLocations) | CellBasedSimulation< 2 > | [inline, protected, virtual] |
| boost::serialization::access class | VertexCryptSimulation2d | [friend] |
| CalculateCellDivisionVector(CellPtr pParentCell) | VertexCryptSimulation2d | [private, virtual] |
| CellBasedSimulation(AbstractCellPopulation< DIM > &rCellPopulation, bool deleteCellPopulationAndForceCollection=false, bool initialiseCells=true) | CellBasedSimulation< 2 > | |
| DoCellBirth() | CellBasedSimulation< 2 > | [protected, virtual] |
| DoCellRemoval() | CellBasedSimulation< 2 > | [protected] |
| GetDt() | CellBasedSimulation< 2 > | |
| GetIdentifier() const | Identifiable | |
| GetNodeLocation(const unsigned &rNodeIndex) | CellBasedSimulation< 2 > | |
| GetNumBirths() | CellBasedSimulation< 2 > | |
| GetNumDeaths() | CellBasedSimulation< 2 > | |
| GetOutputDirectory() | CellBasedSimulation< 2 > | |
| GetOutputNodeVelocities() | CellBasedSimulation< 2 > | |
| mAllocatedMemoryForForceCollection | CellBasedSimulation< 2 > | [protected] |
| mCellKillers | CellBasedSimulation< 2 > | [protected] |
| mDeleteCellPopulation | CellBasedSimulation< 2 > | [protected] |
| mDt | CellBasedSimulation< 2 > | [protected] |
| mEndTime | CellBasedSimulation< 2 > | [protected] |
| mForceCollection | CellBasedSimulation< 2 > | [protected] |
| mInitialiseCells | CellBasedSimulation< 2 > | [protected] |
| mNoBirth | CellBasedSimulation< 2 > | [protected] |
| mNumBirths | CellBasedSimulation< 2 > | [protected] |
| mNumDeaths | CellBasedSimulation< 2 > | [protected] |
| mOutputDirectory | CellBasedSimulation< 2 > | [protected] |
| mOutputNodeVelocities | CellBasedSimulation< 2 > | [protected] |
| mpNodeVelocitiesFile | CellBasedSimulation< 2 > | [protected] |
| mpRandomGenerator | CellBasedSimulation< 2 > | [protected] |
| mpVizSetupFile | CellBasedSimulation< 2 > | [protected] |
| mrCellPopulation | CellBasedSimulation< 2 > | [protected] |
| mSamplingTimestepMultiple | CellBasedSimulation< 2 > | [protected] |
| mSimulationOutputDirectory | CellBasedSimulation< 2 > | [protected] |
| mUpdateCellPopulation | CellBasedSimulation< 2 > | [protected] |
| mUseJiggledBottomCells | VertexCryptSimulation2d | [private] |
| mVizBetaCateninResultsFile | VertexCryptSimulation2d | [private] |
| mWriteBetaCatenin | VertexCryptSimulation2d | [private] |
| OutputSimulationParameters(out_stream &rParamsFile) | VertexCryptSimulation2d | [virtual] |
| OutputSimulationSetup() | CellBasedSimulation< 2 > | [protected] |
| PostSolve() | VertexCryptSimulation2d | [private, virtual] |
| rGetCellPopulation() | CellBasedSimulation< 2 > | |
| rGetCellPopulation() const | CellBasedSimulation< 2 > | |
| rGetForceCollection() const | CellBasedSimulation< 2 > | |
| serialize(Archive &archive, const unsigned int version) | VertexCryptSimulation2d | [inline, private] |
| SetBottomCellAncestors() | VertexCryptSimulation2d | |
| SetDt(double dt) | CellBasedSimulation< 2 > | |
| SetEndTime(double endTime) | CellBasedSimulation< 2 > | |
| SetNoBirth(bool noBirth) | CellBasedSimulation< 2 > | |
| SetOutputDirectory(std::string outputDirectory) | CellBasedSimulation< 2 > | |
| SetOutputNodeVelocities(bool outputNodeVelocities) | CellBasedSimulation< 2 > | |
| SetSamplingTimestepMultiple(unsigned samplingTimestepMultiple) | CellBasedSimulation< 2 > | |
| SetUpdateCellPopulationRule(bool updateCellPopulation) | CellBasedSimulation< 2 > | |
| SetupSolve() | VertexCryptSimulation2d | [private, virtual] |
| SetupWriteBetaCatenin() | VertexCryptSimulation2d | [private] |
| Solve() | CellBasedSimulation< 2 > | |
| StoppingEventHasOccurred() | CellBasedSimulation< 2 > | [protected, virtual] |
| TestVertexCryptSimulation2d (defined in VertexCryptSimulation2d) | VertexCryptSimulation2d | [friend] |
| UpdateCellPopulation() | CellBasedSimulation< 2 > | [protected] |
| UpdateNodePositions(const std::vector< c_vector< double, DIM > > &rNodeForces) | CellBasedSimulation< 2 > | [protected, virtual] |
| UseJiggledBottomCells() | VertexCryptSimulation2d | |
| VertexCryptSimulation2d(AbstractCellPopulation< 2 > &rCellPopulation, bool deleteCellPopulationAndForceCollection=false, bool initialiseCells=true) | VertexCryptSimulation2d | |
| WriteBetaCatenin(double time) | VertexCryptSimulation2d | [private] |
| WriteVisualizerSetupFile() | VertexCryptSimulation2d | [private, virtual] |
| ~CellBasedSimulation() | CellBasedSimulation< 2 > | [virtual] |
| ~Identifiable() | Identifiable | [virtual] |
