AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM > Class Template Reference

#include <AbstractCorrectionTermAssembler.hpp>

Inheritance diagram for AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >:

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Collaboration diagram for AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >:

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List of all members.

Public Member Functions

 AbstractCorrectionTermAssembler (AbstractTetrahedralMesh< ELEM_DIM, SPACE_DIM > *pMesh, AbstractCardiacTissue< ELEM_DIM, SPACE_DIM > *pTissue, unsigned numQuadPoints=2)

Protected Member Functions

void ResetInterpolatedQuantities (void)
void IncrementInterpolatedQuantities (double phiI, const Node< SPACE_DIM > *pNode)
bool ElementAssemblyCriterion (Element< ELEM_DIM, SPACE_DIM > &rElement)

Protected Attributes

double mIionicInterp
std::vector< double > mStateVariablesAtQuadPoint
std::vector< bool > mElementsHasIdenticalCellModels

Detailed Description

template<unsigned ELEM_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
class AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >

A parent class for MonodomainCorrectionTermAssembler and BidomainCorrectionTermAssembler

Definition at line 41 of file AbstractCorrectionTermAssembler.hpp.

Constructor & Destructor Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
AbstractCorrectionTermAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::AbstractCorrectionTermAssembler ( AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *  pMesh,
AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM > *  pTissue,
unsigned  numQuadPoints = 2 
) [inline]

Constructor.

Parameters:
pMesh pointer to the mesh
pTissue pointer to the cardiac tissue
numQuadPoints number of quadrature points

Definition at line 33 of file AbstractCorrectionTermAssembler.cpp.

References AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::GetElementIteratorBegin(), AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::GetElementIteratorEnd(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetIndex(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetNodeGlobalIndex(), AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::GetNumElements(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetNumNodes(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetOwnership(), AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::mElementsHasIdenticalCellModels, and AbstractCardiacFeObjectAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM, true, false, CARDIAC >::mpCardiacTissue.

Member Function Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
void AbstractCorrectionTermAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::ResetInterpolatedQuantities ( void   )  [inline, protected, virtual]

Resets interpolated state variables and ionic current.

Reimplemented from AbstractFeObjectAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >.

Definition at line 70 of file AbstractCorrectionTermAssembler.cpp.

References AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::mIionicInterp, and AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::mStateVariablesAtQuadPoint.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
void AbstractCorrectionTermAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::IncrementInterpolatedQuantities ( double  phiI,
const Node< SPACE_DIM > *  pNode 
) [inline, protected, virtual]

Interpolates state variables and ionic current.

Parameters:
phiI 
pNode 

Reimplemented from AbstractFeObjectAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >.

Definition at line 81 of file AbstractCorrectionTermAssembler.cpp.

References Node< SPACE_DIM >::GetIndex(), AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::mIionicInterp, AbstractCardiacFeObjectAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM, true, false, CARDIAC >::mpCardiacTissue, and AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::mStateVariablesAtQuadPoint.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
bool AbstractCorrectionTermAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::ElementAssemblyCriterion ( Element< ELEMENT_DIM, SPACE_DIM > &  rElement  )  [inline, protected, virtual]

Determine whether to assemble the correction term for this element. Checks if there is a sufficiently steep ionic current gradient to make the expense worthwhile, by checking if the maximum difference between nodal ionic currents is greater than 1 uA/cm^2^.

Parameters:
rElement the element to test

Reimplemented from AbstractFeObjectAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >.

Definition at line 98 of file AbstractCorrectionTermAssembler.cpp.

References AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetIndex(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetNodeGlobalIndex(), AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::mElementsHasIdenticalCellModels, AbstractCardiacFeObjectAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM, true, false, CARDIAC >::mpCardiacTissue, and AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::mStateVariablesAtQuadPoint.

Member Data Documentation

template<unsigned ELEM_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
double AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::mIionicInterp [protected]

Ionic current to be interpolated from cache

Definition at line 46 of file AbstractCorrectionTermAssembler.hpp.

Referenced by AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::IncrementInterpolatedQuantities(), and AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::ResetInterpolatedQuantities().

template<unsigned ELEM_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
std::vector<double> AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::mStateVariablesAtQuadPoint [protected]

State variables interpolated onto quadrature point

Definition at line 49 of file AbstractCorrectionTermAssembler.hpp.

Referenced by AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::ElementAssemblyCriterion(), AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::IncrementInterpolatedQuantities(), and AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::ResetInterpolatedQuantities().

template<unsigned ELEM_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
std::vector<bool> AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::mElementsHasIdenticalCellModels [protected]

Vector of bools, one bool per element, saying whether that element has identical cell models at each node. If this is not the case, SVI is certainly not posssible in this element

Definition at line 61 of file AbstractCorrectionTermAssembler.hpp.

Referenced by AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::AbstractCorrectionTermAssembler(), and AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::ElementAssemblyCriterion().

The documentation for this class was generated from the following files:
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