AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM > Class Template Reference
#include <AbstractHdf5Converter.hpp>
Public Member Functions | |
| AbstractHdf5Converter (std::string inputDirectory, std::string fileBaseName, AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh, std::string subdirectoryName) | |
| ~AbstractHdf5Converter () | |
Protected Attributes | |
| Hdf5DataReader * | mpReader |
| unsigned | mNumVariables |
| std::string | mFileBaseName |
| AbstractTetrahedralMesh < ELEMENT_DIM, SPACE_DIM > * | mpMesh |
| OutputFileHandler * | mpOutputFileHandler |
Detailed Description
template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
class AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >
This derived children of this class convert from Hdf5 format to a range of other formats for postprocessing
Definition at line 42 of file AbstractHdf5Converter.hpp.
Constructor & Destructor Documentation
| AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::AbstractHdf5Converter | ( | std::string | inputDirectory, | |
| std::string | fileBaseName, | |||
| AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > * | pMesh, | |||
| std::string | subdirectoryName | |||
| ) | [inline] |
Constructor, which does the conversion and writes the .info file.
- Note:
- This method is collective, and must be called by al processes.
- Parameters:
-
inputDirectory The input directory, relative to CHASTE_TEST_OUTPUT, where the .h5 file has been written fileBaseName The base name of the data file. pMesh Pointer to the mesh. subdirectoryName name for the output directory to be created (relative to HeartConfig::Instance()->GetOutputDirectory())
Definition at line 36 of file AbstractHdf5Converter.cpp.
References PetscTools::AmMaster(), EXCEPTION, Hdf5DataReader::GetNumberOfRows(), HeartConfig::GetPrintingTimeStep(), ChasteBuildInfo::GetProvenanceString(), Hdf5DataReader::GetUnlimitedDimensionValues(), Hdf5DataReader::GetVariableNames(), HeartConfig::Instance(), AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::mFileBaseName, AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::mNumVariables, AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::mpMesh, AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::mpOutputFileHandler, AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::mpReader, OutputFileHandler::OpenOutputFile(), and HeartConfig::Write().
| AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::~AbstractHdf5Converter | ( | ) | [inline] |
Destructor
Definition at line 78 of file AbstractHdf5Converter.cpp.
References AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::mpOutputFileHandler, and AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::mpReader.
Member Data Documentation
Hdf5DataReader* AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::mpReader [protected] |
Pointer to reader of the file to be converted
Definition at line 45 of file AbstractHdf5Converter.hpp.
Referenced by AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::AbstractHdf5Converter(), Hdf5ToCmguiConverter< ELEMENT_DIM, SPACE_DIM >::Hdf5ToCmguiConverter(), Hdf5ToMeshalyzerConverter< ELEMENT_DIM, SPACE_DIM >::Hdf5ToMeshalyzerConverter(), Hdf5ToVtkConverter< ELEMENT_DIM, SPACE_DIM >::Hdf5ToVtkConverter(), Hdf5ToMeshalyzerConverter< ELEMENT_DIM, SPACE_DIM >::Write(), Hdf5ToCmguiConverter< ELEMENT_DIM, SPACE_DIM >::Write(), Hdf5ToCmguiConverter< ELEMENT_DIM, SPACE_DIM >::WriteCmguiScript(), and AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::~AbstractHdf5Converter().
unsigned AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::mNumVariables [protected] |
Read from the reader - number of variables to output
Definition at line 46 of file AbstractHdf5Converter.hpp.
Referenced by AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::AbstractHdf5Converter(), and Hdf5ToVtkConverter< ELEMENT_DIM, SPACE_DIM >::Hdf5ToVtkConverter().
std::string AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::mFileBaseName [protected] |
Base name for the files [basename].vtu, [basename].dat etc.
Definition at line 47 of file AbstractHdf5Converter.hpp.
Referenced by AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::AbstractHdf5Converter(), Hdf5ToMeshalyzerConverter< ELEMENT_DIM, SPACE_DIM >::Write(), Hdf5ToCmguiConverter< ELEMENT_DIM, SPACE_DIM >::Write(), and Hdf5ToCmguiConverter< ELEMENT_DIM, SPACE_DIM >::WriteCmguiScript().
AbstractTetrahedralMesh<ELEMENT_DIM,SPACE_DIM>* AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::mpMesh [protected] |
Pointer to the mesh.
Definition at line 48 of file AbstractHdf5Converter.hpp.
Referenced by AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::AbstractHdf5Converter(), Hdf5ToCmguiConverter< ELEMENT_DIM, SPACE_DIM >::Hdf5ToCmguiConverter(), Hdf5ToMeshalyzerConverter< ELEMENT_DIM, SPACE_DIM >::Hdf5ToMeshalyzerConverter(), and Hdf5ToVtkConverter< ELEMENT_DIM, SPACE_DIM >::Hdf5ToVtkConverter().
OutputFileHandler* AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::mpOutputFileHandler [protected] |
Intialised as directory in whicht to store the results
Definition at line 49 of file AbstractHdf5Converter.hpp.
Referenced by AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::AbstractHdf5Converter(), Hdf5ToMeshalyzerConverter< ELEMENT_DIM, SPACE_DIM >::Write(), Hdf5ToCmguiConverter< ELEMENT_DIM, SPACE_DIM >::Write(), Hdf5ToCmguiConverter< ELEMENT_DIM, SPACE_DIM >::WriteCmguiScript(), and AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::~AbstractHdf5Converter().
The documentation for this class was generated from the following files:
- heart/src/postprocessing/AbstractHdf5Converter.hpp
- heart/src/postprocessing/AbstractHdf5Converter.cpp
