BidomainTissue< SPACE_DIM > Class Template Reference

#include <BidomainTissue.hpp>

Inheritance diagram for BidomainTissue< SPACE_DIM >:

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Collaboration diagram for BidomainTissue< SPACE_DIM >:

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List of all members.

Public Member Functions
	BidomainTissue (AbstractCardiacCellFactory< SPACE_DIM > *pCellFactory, bool exchangeHalos=false)
	BidomainTissue (AbstractTetrahedralMesh< SPACE_DIM, SPACE_DIM > *pMesh)
	~BidomainTissue ()
const c_matrix< double, SPACE_DIM, SPACE_DIM > &	rGetExtracellularConductivityTensor (unsigned elementIndex)
Private Member Functions
template<class Archive>
void	serialize (Archive &archive, const unsigned int version)
void	CreateExtracellularConductivityTensors ()
Private Attributes
AbstractConductivityTensors < SPACE_DIM, SPACE_DIM > *	mpExtracellularConductivityTensors
Friends
class	TestBidomainTissue
class	boost::serialization::access

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Detailed Description

template<unsigned SPACE_DIM>
class BidomainTissue< SPACE_DIM >

BidomainTissue class.

See documentation for AbstractCardiacTissue. This class also has extracellular conductivity tensors.

Definition at line 53 of file BidomainTissue.hpp.

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Constructor & Destructor Documentation

template<unsigned SPACE_DIM>

BidomainTissue< SPACE_DIM >::BidomainTissue	(	AbstractCardiacCellFactory< SPACE_DIM > *	pCellFactory,
		bool	exchangeHalos = false
	)			[inline]

Constructor sets up extracellular conductivity tensors.

Parameters:

	pCellFactory	factory to pass on to the base class constructor
	exchangeHalos	used in state-variable interpolation. Defaults to false.

Definition at line 38 of file BidomainTissue.cpp.

References BidomainTissue< SPACE_DIM >::CreateExtracellularConductivityTensors().

template<unsigned SPACE_DIM>

BidomainTissue< SPACE_DIM >::BidomainTissue

(

AbstractTetrahedralMesh< SPACE_DIM, SPACE_DIM > *

pMesh

)

[inline]

Archiving constructor

Parameters:

pMesh

a pointer to the AbstractTetrahedral mesh (recovered from archive).

Definition at line 47 of file BidomainTissue.cpp.

References BidomainTissue< SPACE_DIM >::CreateExtracellularConductivityTensors().

template<unsigned SPACE_DIM>

BidomainTissue< SPACE_DIM >::~BidomainTissue

(

)

[inline]

Destructor

Definition at line 159 of file BidomainTissue.cpp.

References BidomainTissue< SPACE_DIM >::mpExtracellularConductivityTensors.

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Member Function Documentation

template<unsigned SPACE_DIM>

template<class Archive>

void BidomainTissue< SPACE_DIM >::serialize	(	Archive &	archive,
		const unsigned int	version
	)			[inline, private]

Archive the member variables.

Parameters:

	archive
	version

Definition at line 67 of file BidomainTissue.hpp.

template<unsigned SPACE_DIM>

void BidomainTissue< SPACE_DIM >::CreateExtracellularConductivityTensors

(

)

[inline, private]

Convenience method for extracellular conductivity tensors creation

Definition at line 54 of file BidomainTissue.cpp.

References RelativeTo::AbsoluteOrCwd, FileFinder::Exists(), HeartConfig::GetConductivityHeterogeneities(), HeartConfig::GetConductivityHeterogeneitiesProvided(), HeartConfig::GetConductivityMedia(), HeartConfig::GetExtracellularConductivities(), HeartConfig::GetLoadMesh(), AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::GetNumLocalElements(), AbstractConductivityTensors< ELEMENT_DIM, SPACE_DIM >::Init(), HeartConfig::Instance(), HeartConfig::IsMeshProvided(), AbstractCardiacTissue< SPACE_DIM >::mFibreFilePathNoExtension, AbstractCardiacTissue< SPACE_DIM >::mpConfig, BidomainTissue< SPACE_DIM >::mpExtracellularConductivityTensors, AbstractCardiacTissue< SPACE_DIM >::mpMesh, NEVER_REACHED, PetscTools::ReplicateException(), AbstractConductivityTensors< ELEMENT_DIM, SPACE_DIM >::SetConstantConductivities(), AbstractConductivityTensors< ELEMENT_DIM, SPACE_DIM >::SetFibreOrientationFile(), and AbstractConductivityTensors< ELEMENT_DIM, SPACE_DIM >::SetNonConstantConductivities().

Referenced by BidomainTissue< SPACE_DIM >::BidomainTissue().

template<unsigned SPACE_DIM>

const c_matrix< double, SPACE_DIM, SPACE_DIM > & BidomainTissue< SPACE_DIM >::rGetExtracellularConductivityTensor

(

unsigned

elementIndex

)

[inline, virtual]

Get the extracellular conductivity tensor for the given element

Parameters:

elementIndex

index of the element of interest

Reimplemented from AbstractCardiacTissue< SPACE_DIM >.

Definition at line 169 of file BidomainTissue.cpp.

References AbstractCardiacTissue< SPACE_DIM >::mpConductivityModifier, BidomainTissue< SPACE_DIM >::mpExtracellularConductivityTensors, and AbstractConductivityModifier< ELEMENT_DIM, SPACE_DIM >::rGetModifiedConductivityTensor().

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Friends And Related Function Documentation

template<unsigned SPACE_DIM>

friend class boost::serialization::access [friend]

Needed for serialization.

Reimplemented from AbstractCardiacTissue< SPACE_DIM >.

Definition at line 59 of file BidomainTissue.hpp.

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Member Data Documentation

template<unsigned SPACE_DIM>

AbstractConductivityTensors<SPACE_DIM,SPACE_DIM>* BidomainTissue< SPACE_DIM >::mpExtracellularConductivityTensors [private]

Extracellular conductivity tensors.

Definition at line 74 of file BidomainTissue.hpp.

Referenced by BidomainTissue< SPACE_DIM >::CreateExtracellularConductivityTensors(), BidomainTissue< SPACE_DIM >::rGetExtracellularConductivityTensor(), and BidomainTissue< SPACE_DIM >::~BidomainTissue().

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The documentation for this class was generated from the following files:

• heart/src/tissue/BidomainTissue.hpp
• heart/src/tissue/BidomainTissue.cpp