CellCycleModelOdeSolver< CELL_CYCLE_MODEL, ODE_SOLVER > Class Template Reference
#include <CellCycleModelOdeSolver.hpp>
Public Member Functions | |
| bool | IsSetUp () |
| void | Initialise () |
| virtual bool | IsAdaptive () |
Static Public Member Functions | |
| static boost::shared_ptr < CellCycleModelOdeSolver < CELL_CYCLE_MODEL, ODE_SOLVER > > | Instance () |
Private Member Functions | |
| CellCycleModelOdeSolver () | |
| template<class Archive> | |
| void | serialize (Archive &archive, const unsigned int version) |
Static Private Attributes | |
| static boost::shared_ptr < CellCycleModelOdeSolver < CELL_CYCLE_MODEL, ODE_SOLVER > > | mpInstance |
Friends | |
| class | boost::serialization::access |
Detailed Description
template<class CELL_CYCLE_MODEL, class ODE_SOLVER>
class CellCycleModelOdeSolver< CELL_CYCLE_MODEL, ODE_SOLVER >
A concrete implementation of AbstractCellCycleModelOdeSolver, that uses templates to provide an implementation for any pair of cell-cycle model and ODE solver classes.All ODE-based cell-cycle model developers need to do is set mpOdeSolver in their constructor: mpOdeSolver = CellCycleModelOdeSolver<CELL_CYCLE_MODEL, ODE_SOLVER>::Instance();
This class contains all the machinery to make it a singleton, hence providing exactly one instance per pair of values of the template parameters.
Definition at line 50 of file CellCycleModelOdeSolver.hpp.
Constructor & Destructor Documentation
| CellCycleModelOdeSolver< CELL_CYCLE_MODEL, ODE_SOLVER >::CellCycleModelOdeSolver | ( | ) | [inline, private] |
Default constructor. Not user accessible; to obtain an instance of this class use the Instance method.
The semantics of shared_ptr are different from normal pointers; we don't care if a second instance is constructed when loading an archive, since archiving the shared_ptr will ensure that the 'singleton' is correctly serialized. Thus, here we do not require an assertion that mpInstance is NULL, as we do in the constructors of the SimulationTime singleton class.
Definition at line 100 of file CellCycleModelOdeSolver.hpp.
Member Function Documentation
| void CellCycleModelOdeSolver< CELL_CYCLE_MODEL, ODE_SOLVER >::serialize | ( | Archive & | archive, | |
| const unsigned int | version | |||
| ) | [inline, private] |
Archive the cell-cycle model, never used directly - boost uses this.
- Parameters:
-
archive the archive version the current version of this class
Reimplemented from AbstractCellCycleModelOdeSolver.
Definition at line 68 of file CellCycleModelOdeSolver.hpp.
References CellCycleModelOdeSolver< CELL_CYCLE_MODEL, ODE_SOLVER >::mpInstance.
| boost::shared_ptr< CellCycleModelOdeSolver< CELL_CYCLE_MODEL, ODE_SOLVER > > CellCycleModelOdeSolver< CELL_CYCLE_MODEL, ODE_SOLVER >::Instance | ( | ) | [inline, static] |
Return a pointer to the singleton instance, creating it if necessary.
Definition at line 113 of file CellCycleModelOdeSolver.hpp.
References CellCycleModelOdeSolver< CELL_CYCLE_MODEL, ODE_SOLVER >::mpInstance.
Referenced by Alarcon2004OxygenBasedCellCycleModel::Alarcon2004OxygenBasedCellCycleModel(), SingleOdeWntCellCycleModel::SingleOdeWntCellCycleModel(), StochasticWntCellCycleModel::StochasticWntCellCycleModel(), TysonNovakCellCycleModel::TysonNovakCellCycleModel(), VanLeeuwen2009WntSwatCellCycleModelHypothesisOne::VanLeeuwen2009WntSwatCellCycleModelHypothesisOne(), VanLeeuwen2009WntSwatCellCycleModelHypothesisTwo::VanLeeuwen2009WntSwatCellCycleModelHypothesisTwo(), and WntCellCycleModel::WntCellCycleModel().
| bool CellCycleModelOdeSolver< CELL_CYCLE_MODEL, ODE_SOLVER >::IsSetUp | ( | ) | [inline, virtual] |
Is the instance in existence and fully set up.
Implements AbstractCellCycleModelOdeSolver.
Definition at line 123 of file CellCycleModelOdeSolver.hpp.
References AbstractCellCycleModelOdeSolver::mpOdeSolver.
| void CellCycleModelOdeSolver< CELL_CYCLE_MODEL, ODE_SOLVER >::Initialise | ( | void | ) | [inline, virtual] |
Initialise the ODE solver.
Implements AbstractCellCycleModelOdeSolver.
Definition at line 129 of file CellCycleModelOdeSolver.hpp.
References AbstractCellCycleModelOdeSolver::mpOdeSolver.
| bool CellCycleModelOdeSolver< CELL_CYCLE_MODEL, ODE_SOLVER >::IsAdaptive | ( | ) | [inline, virtual] |
Return true iff this is an adaptive solver such as CVODE for which it is safe to set the 'timestep' to be the outer simulation timestep, because the ODE solver will use this as its maximum, not actual, timestep.
By default calls the base class version; it is defined here so that specializations can override it.
Reimplemented from AbstractCellCycleModelOdeSolver.
Definition at line 135 of file CellCycleModelOdeSolver.hpp.
References AbstractCellCycleModelOdeSolver::IsAdaptive().
Friends And Related Function Documentation
friend class boost::serialization::access [friend] |
Needed for serialization.
Reimplemented from AbstractCellCycleModelOdeSolver.
Definition at line 60 of file CellCycleModelOdeSolver.hpp.
Member Data Documentation
boost::shared_ptr< CellCycleModelOdeSolver< CELL_CYCLE_MODEL, ODE_SOLVER > > CellCycleModelOdeSolver< CELL_CYCLE_MODEL, ODE_SOLVER >::mpInstance [inline, static, private] |
The single instance of this class, for this ODE_SOLVER.
Definition of the instance static member.
Definition at line 54 of file CellCycleModelOdeSolver.hpp.
Referenced by CellCycleModelOdeSolver< CELL_CYCLE_MODEL, BackwardEulerIvpOdeSolver >::Instance(), CellCycleModelOdeSolver< CELL_CYCLE_MODEL, ODE_SOLVER >::Instance(), CellCycleModelOdeSolver< CELL_CYCLE_MODEL, BackwardEulerIvpOdeSolver >::serialize(), and CellCycleModelOdeSolver< CELL_CYCLE_MODEL, ODE_SOLVER >::serialize().
The documentation for this class was generated from the following file:
- cell_based/src/population/cell/cycle/CellCycleModelOdeSolver.hpp
