MonodomainProblem< ELEMENT_DIM, SPACE_DIM > Class Template Reference
#include <MonodomainProblem.hpp>
Public Member Functions | |
| AbstractCardiacTissue < ELEMENT_DIM, SPACE_DIM > * | CreateCardiacTissue () |
| AbstractDynamicLinearPdeSolver < ELEMENT_DIM, SPACE_DIM, 1 > * | CreateSolver () |
| MonodomainProblem (AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM > *pCellFactory) | |
| MonodomainProblem () | |
| ~MonodomainProblem () | |
| MonodomainTissue< ELEMENT_DIM, SPACE_DIM > * | GetMonodomainTissue () |
| void | WriteInfo (double time) |
| virtual void | DefineWriterColumns (bool extending) |
| virtual void | WriteOneStep (double time, Vec voltageVec) |
Protected Attributes | |
| MonodomainTissue< ELEMENT_DIM, SPACE_DIM > * | mpMonodomainTissue |
Private Member Functions | |
| template<class Archive> | |
| void | serialize (Archive &archive, const unsigned int version) |
Friends | |
| class | boost::serialization::access |
Detailed Description
template<unsigned ELEMENT_DIM, unsigned SPACE_DIM = ELEMENT_DIM>
class MonodomainProblem< ELEMENT_DIM, SPACE_DIM >
Class which specifies and solves a monodomain problem.
Definition at line 47 of file MonodomainProblem.hpp.
Constructor & Destructor Documentation
| MonodomainProblem< ELEMENT_DIM, SPACE_DIM >::MonodomainProblem | ( | AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM > * | pCellFactory | ) | [inline] |
Constructor
- Parameters:
-
pCellFactory User defined cell factory which shows how the pde should create cells.
Definition at line 83 of file MonodomainProblem.cpp.
| MonodomainProblem< ELEMENT_DIM, SPACE_DIM >::MonodomainProblem | ( | ) | [inline] |
Constructor just used for archiving
Definition at line 90 of file MonodomainProblem.cpp.
| MonodomainProblem< ELEMENT_DIM, SPACE_DIM >::~MonodomainProblem | ( | ) | [inline] |
Destructor
Definition at line 97 of file MonodomainProblem.cpp.
Member Function Documentation
| void MonodomainProblem< ELEMENT_DIM, SPACE_DIM >::serialize | ( | Archive & | archive, | |
| const unsigned int | version | |||
| ) | [inline, private] |
Archive the member variables.
- Parameters:
-
archive version
Definition at line 58 of file MonodomainProblem.hpp.
| AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM > * MonodomainProblem< ELEMENT_DIM, SPACE_DIM >::CreateCardiacTissue | ( | ) | [inline, virtual] |
Create our monodomain PDE
Implements AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, 1 >.
Definition at line 39 of file MonodomainProblem.cpp.
References HeartConfig::GetUseStateVariableInterpolation(), HeartConfig::Instance(), AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, 1 >::mpCellFactory, and MonodomainProblem< ELEMENT_DIM, SPACE_DIM >::mpMonodomainTissue.
| AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 1 > * MonodomainProblem< ELEMENT_DIM, SPACE_DIM >::CreateSolver | ( | ) | [inline, virtual] |
Create an suitable solver for monodomain problems
Implements AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, 1 >.
Definition at line 46 of file MonodomainProblem.cpp.
References HeartConfig::GetUseReactionDiffusionOperatorSplitting(), HeartConfig::Instance(), AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, 1 >::mpBoundaryConditionsContainer, AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, 1 >::mpMesh, MonodomainProblem< ELEMENT_DIM, SPACE_DIM >::mpMonodomainTissue, and AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, 1 >::mUseMatrixBasedRhsAssembly.
Referenced by CardiacElectroMechanicsProblem< DIM >::Solve().
| MonodomainTissue< ELEMENT_DIM, SPACE_DIM > * MonodomainProblem< ELEMENT_DIM, SPACE_DIM >::GetMonodomainTissue | ( | ) | [inline] |
Get the monodomain PDE
Definition at line 102 of file MonodomainProblem.cpp.
References MonodomainProblem< ELEMENT_DIM, SPACE_DIM >::mpMonodomainTissue.
Referenced by CardiacElectroMechanicsProblem< DIM >::Initialise().
| void MonodomainProblem< ELEMENT_DIM, SPACE_DIM >::WriteInfo | ( | double | time | ) | [inline, virtual] |
Print out time and max/min voltage values at current time.
- Parameters:
-
time the current time
Implements AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, 1 >.
Definition at line 109 of file MonodomainProblem.cpp.
References PetscTools::AmMaster(), and AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, 1 >::mSolution.
| void MonodomainProblem< ELEMENT_DIM, SPACE_DIM >::DefineWriterColumns | ( | bool | extending | ) | [inline, virtual] |
Define what variables are written to the primary results file.
- Parameters:
-
extending whether we are extending an existing results file
Reimplemented from AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, 1 >.
Definition at line 128 of file MonodomainProblem.cpp.
References AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::DefineExtraVariablesWriterColumns(), and AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::DefineWriterColumns().
| void MonodomainProblem< ELEMENT_DIM, SPACE_DIM >::WriteOneStep | ( | double | time, | |
| Vec | voltageVec | |||
| ) | [inline, virtual] |
Write one timestep of output data to the primary results file. Adds the extracellular potential to the results.
- Parameters:
-
time the current time voltageVec the solution vector to write
Implements AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, 1 >.
Definition at line 135 of file MonodomainProblem.cpp.
References AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, 1 >::mpWriter, AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, 1 >::mVoltageColumnId, Hdf5DataWriter::PutUnlimitedVariable(), Hdf5DataWriter::PutVector(), and AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::WriteExtraVariablesOneStep().
Referenced by CardiacElectroMechanicsProblem< DIM >::Solve().
Friends And Related Function Documentation
friend class boost::serialization::access [friend] |
Needed for serialization.
Reimplemented from AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, 1 >.
Definition at line 50 of file MonodomainProblem.hpp.
Member Data Documentation
MonodomainTissue<ELEMENT_DIM,SPACE_DIM>* MonodomainProblem< ELEMENT_DIM, SPACE_DIM >::mpMonodomainTissue [protected] |
The monodomain PDE object
Definition at line 66 of file MonodomainProblem.hpp.
Referenced by MonodomainProblem< ELEMENT_DIM, SPACE_DIM >::CreateCardiacTissue(), MonodomainProblem< ELEMENT_DIM, SPACE_DIM >::CreateSolver(), MonodomainProblem< ELEMENT_DIM, SPACE_DIM >::GetMonodomainTissue(), and MonodomainProblem< DIM >::serialize().
The documentation for this class was generated from the following files:
- heart/src/problem/MonodomainProblem.hpp
- heart/src/problem/MonodomainProblem.cpp
