RadialSloughingCellKiller Class Reference
#include <RadialSloughingCellKiller.hpp>
Public Member Functions | |
| RadialSloughingCellKiller (AbstractCellPopulation< 2 > *pCellPopulation, c_vector< double, 2 > centre, double radius) | |
| c_vector< double, 2 > | GetCentre () const |
| double | GetRadius () const |
| virtual void | TestAndLabelCellsForApoptosisOrDeath () |
| void | OutputCellKillerParameters (out_stream &rParamsFile) |
Private Member Functions | |
| template<class Archive> | |
| void | serialize (Archive &archive, const unsigned int version) |
Private Attributes | |
| c_vector< double, 2 > | mCentre |
| double | mRadius |
Friends | |
| class | boost::serialization::access |
Detailed Description
Radial sloughing cell killer for use with the crypt projection model.Kills cells if they are outside a circle whose centre and radius can be passed in but are take default values.
Definition at line 42 of file RadialSloughingCellKiller.hpp.
Constructor & Destructor Documentation
| RadialSloughingCellKiller::RadialSloughingCellKiller | ( | AbstractCellPopulation< 2 > * | pCellPopulation, | |
| c_vector< double, 2 > | centre, | |||
| double | radius | |||
| ) |
Constructor.
- Parameters:
-
pCellPopulation pointer to the cell population. centre the centre of death. radius the radius of death.
Definition at line 31 of file RadialSloughingCellKiller.cpp.
Member Function Documentation
| void RadialSloughingCellKiller::serialize | ( | Archive & | archive, | |
| const unsigned int | version | |||
| ) | [inline, private] |
Serialize the object and its member variables.
- Parameters:
-
archive the archive version the current version of this class
Reimplemented from AbstractCellKiller< 2 >.
Definition at line 54 of file RadialSloughingCellKiller.hpp.
| c_vector< double, 2 > RadialSloughingCellKiller::GetCentre | ( | ) | const |
| double RadialSloughingCellKiller::GetRadius | ( | ) | const |
| void RadialSloughingCellKiller::TestAndLabelCellsForApoptosisOrDeath | ( | ) | [virtual] |
Loop over cells and kills cells outside boundary.
Implements AbstractCellKiller< 2 >.
Definition at line 48 of file RadialSloughingCellKiller.cpp.
References AbstractCellPopulation< DIM >::Begin(), AbstractCellPopulation< DIM >::End(), AbstractCellPopulation< DIM >::GetLocationOfCellCentre(), mCentre, AbstractCellKiller< 2 >::mpCellPopulation, and mRadius.
| void RadialSloughingCellKiller::OutputCellKillerParameters | ( | out_stream & | rParamsFile | ) | [virtual] |
Outputs cell killer parameters to file
As this method is pure virtual, it must be overridden in subclasses.
- Parameters:
-
rParamsFile the file stream to which the parameters are output
Implements AbstractCellKiller< 2 >.
Definition at line 64 of file RadialSloughingCellKiller.cpp.
References mCentre, mRadius, and AbstractCellKiller< SPACE_DIM >::OutputCellKillerParameters().
Friends And Related Function Documentation
friend class boost::serialization::access [friend] |
Needed for serialization.
Reimplemented from AbstractCellKiller< 2 >.
Definition at line 52 of file RadialSloughingCellKiller.hpp.
Member Data Documentation
c_vector<double,2> RadialSloughingCellKiller::mCentre [private] |
Centre of death.
Definition at line 47 of file RadialSloughingCellKiller.hpp.
Referenced by GetCentre(), OutputCellKillerParameters(), and TestAndLabelCellsForApoptosisOrDeath().
double RadialSloughingCellKiller::mRadius [private] |
Radius of death.
Definition at line 50 of file RadialSloughingCellKiller.hpp.
Referenced by GetRadius(), OutputCellKillerParameters(), and TestAndLabelCellsForApoptosisOrDeath().
The documentation for this class was generated from the following files:
- crypt/src/killers/RadialSloughingCellKiller.hpp
- crypt/src/killers/RadialSloughingCellKiller.cpp
