, including all inherited members.
| AbstractCardiacProblem(AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM > *pCellFactory) | AbstractCardiacProblem< DIM, DIM, 2 > | |
| AbstractCardiacProblem() | AbstractCardiacProblem< DIM, DIM, 2 > | |
| AdaptiveBidomainProblem(AbstractCardiacCellFactory< 3 > *pCellFactory, bool hasBath=false) | AdaptiveBidomainProblem | |
| AdaptMesh() | AdaptiveBidomainProblem | |
| AddCurrentSolutionToAdaptiveMesh(Vec solution) | AdaptiveBidomainProblem | |
| AnalyseMeshForBath() | BidomainProblem< 3 > | [protected] |
| AtBeginningOfTimestep(double time) | BidomainProblem< 3 > | [virtual] |
| BidomainProblem(AbstractCardiacCellFactory< DIM > *pCellFactory, bool hasBath=false) | BidomainProblem< 3 > | |
| BidomainProblem() | BidomainProblem< 3 > | |
| boost::serialization::access class | BidomainProblem< 3 > | [friend] |
| CardiacElectroMechanicsProblem class | AbstractCardiacProblem< DIM, DIM, 2 > | [friend] |
| CloseFilesAndPostProcess() | AbstractCardiacProblem< DIM, DIM, 2 > | |
| CreateCardiacTissue() | BidomainProblem< 3 > | [protected, virtual] |
| CreateInitialCondition() | BidomainProblem< 3 > | [protected, virtual] |
| CreateSolver() | BidomainProblem< 3 > | [protected, virtual] |
| DefineExtraVariablesWriterColumns(bool extending) | AbstractCardiacProblem< DIM, DIM, 2 > | |
| DefineWriterColumns(bool extending) | BidomainProblem< 3 > | [virtual] |
| DoNotAdaptMesh() | AdaptiveBidomainProblem | |
| GetBidomainTissue() | BidomainProblem< 3 > | |
| GetCurrentTime() | AbstractCardiacProblem< DIM, DIM, 2 > | |
| GetDataReader() | AbstractCardiacProblem< DIM, DIM, 2 > | |
| GetGradation() | AdaptiveBidomainProblem | |
| GetHasBath() | BidomainProblem< 3 > | [virtual] |
| GetMaxEdgeLength() | AdaptiveBidomainProblem | |
| GetMaxMeshNodes() | AdaptiveBidomainProblem | |
| GetMinEdgeLength() | AdaptiveBidomainProblem | |
| GetNumAdaptSweeps() | AdaptiveBidomainProblem | |
| GetSigma() | AdaptiveBidomainProblem | |
| GetSolution() | AbstractCardiacProblem< DIM, DIM, 2 > | |
| GetSolutionDistributedVector() | AbstractCardiacProblem< DIM, DIM, 2 > | |
| GetTargetError() | AdaptiveBidomainProblem | |
| GetTissue() | AbstractCardiacProblem< DIM, DIM, 2 > | |
| Initialise() | AbstractCardiacProblem< DIM, DIM, 2 > | |
| InitialiseWriter() | AbstractCardiacProblem< DIM, DIM, 2 > | |
| InitializeSolutionOnAdaptedMesh(VtkMeshReader< 3, 3 > *reader) | AdaptiveBidomainProblem | |
| LoadExtraArchive(Archive &archive, unsigned version) | AbstractCardiacProblem< DIM, DIM, 2 > | [inline] |
| LoadExtraArchiveForBidomain(Archive &archive, unsigned version) | BidomainProblem< 3 > | [inline] |
| LoadSimulationFromVtuFile() | AdaptiveBidomainProblem | |
| mAllocatedMemoryForMesh | AbstractCardiacProblem< DIM, DIM, 2 > | [protected] |
| mCurrentTime | AbstractCardiacProblem< DIM, DIM, 2 > | [protected] |
| mExtracelluarColumnId | BidomainProblem< 3 > | [protected] |
| mExtraVariablesId | AbstractCardiacProblem< DIM, DIM, 2 > | [protected] |
| mFixedExtracellularPotentialNodes | BidomainProblem< 3 > | [protected] |
| mHasBath | BidomainProblem< 3 > | [protected] |
| mInitializeFromVtu | AdaptiveBidomainProblem | [private] |
| mIsMeshAdapting | AdaptiveBidomainProblem | [private] |
| mMeshFilename | AbstractCardiacProblem< DIM, DIM, 2 > | [protected] |
| mNeumannStimulusDuration | AdaptiveBidomainProblem | [private] |
| mNeumannStimulusIndex | AdaptiveBidomainProblem | [private] |
| mNeumannStimulusLowerValue | AdaptiveBidomainProblem | [private] |
| mNeumannStimulusMagnitude | AdaptiveBidomainProblem | [private] |
| mNeumannStimulusPeriod | AdaptiveBidomainProblem | [private] |
| mNeumannStimulusUpperValue | AdaptiveBidomainProblem | [private] |
| mNodeColumnId | AbstractCardiacProblem< DIM, DIM, 2 > | [protected] |
| mNodesToOutput | AbstractCardiacProblem< DIM, DIM, 2 > | [protected] |
| mOutputDirectory | AdaptiveBidomainProblem | [private] |
| mOutputFilenamePrefix | AdaptiveBidomainProblem | [private] |
| mpAdaptiveMesh | AdaptiveBidomainProblem | [private] |
| mpBidomainTissue | BidomainProblem< 3 > | [protected] |
| mpBoundaryConditionsContainer | AbstractCardiacProblem< DIM, DIM, 2 > | [protected] |
| mpCardiacTissue | AbstractCardiacProblem< DIM, DIM, 2 > | [protected] |
| mpCellFactory | AbstractCardiacProblem< DIM, DIM, 2 > | [protected] |
| mpDefaultBoundaryConditionsContainer | AbstractCardiacProblem< DIM, DIM, 2 > | [protected] |
| mpElectrodes | BidomainProblem< 3 > | [protected] |
| mpMesh | AbstractCardiacProblem< DIM, DIM, 2 > | [protected] |
| mpNeumannStimulus | AdaptiveBidomainProblem | [private] |
| mpNeumannStimulusBoundaryCondition | AdaptiveBidomainProblem | [private] |
| mPrintOutput | AbstractCardiacProblem< DIM, DIM, 2 > | [protected] |
| mpSolver | AdaptiveBidomainProblem | [private] |
| mpTimeAdaptivityController | AbstractCardiacProblem< DIM, DIM, 2 > | [protected] |
| mpWriter | AbstractCardiacProblem< DIM, DIM, 2 > | [protected] |
| mRowForAverageOfPhiZeroed | BidomainProblem< 3 > | [protected] |
| mSolution | AbstractCardiacProblem< DIM, DIM, 2 > | [protected] |
| mTimeColumnId | AbstractCardiacProblem< DIM, DIM, 2 > | [protected] |
| mUseMatrixBasedRhsAssembly | AbstractCardiacProblem< DIM, DIM, 2 > | [protected] |
| mUseNeumannBoundaryConditions | AdaptiveBidomainProblem | [private] |
| mVoltageColumnId | AbstractCardiacProblem< DIM, DIM, 2 > | [protected] |
| mWriteInfo | AbstractCardiacProblem< DIM, DIM, 2 > | [protected] |
| OnEndOfTimestep(double time) | BidomainProblem< 3 > | [virtual] |
| PreSolveChecks() | BidomainProblem< 3 > | [virtual] |
| PrintOutput(bool rPrintOutput) | AbstractCardiacProblem< DIM, DIM, 2 > | |
| rGetMesh() | AbstractCardiacProblem< DIM, DIM, 2 > | |
| SetBoundaryConditionsContainer(BccType pBcc) | AbstractCardiacProblem< DIM, DIM, 2 > | |
| SetElectrodes() | BidomainProblem< 3 > | [virtual] |
| SetFixedExtracellularPotentialNodes(std::vector< unsigned > nodes) | BidomainProblem< 3 > | |
| SetMesh(AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh) | AbstractCardiacProblem< DIM, DIM, 2 > | |
| SetNeumannStimulusMagnitudeAndDuration(double magnitude, double duration, double period=DBL_MAX) | AdaptiveBidomainProblem | |
| SetNodeForAverageOfPhiZeroed(unsigned node) | BidomainProblem< 3 > | |
| SetNodesPerProcessorFilename(const std::string &rFilename) | AbstractCardiacProblem< DIM, DIM, 2 > | |
| SetOutputNodes(std::vector< unsigned > &rNodesToOutput) | AbstractCardiacProblem< DIM, DIM, 2 > | |
| SetUpAdditionalStoppingTimes(std::vector< double > &rAdditionalStoppingTimes) | BidomainProblem< 3 > | [virtual] |
| SetupNeumannBoundaryConditionOnMesh() | AdaptiveBidomainProblem | |
| SetUseTimeAdaptivityController(bool useAdaptivity, AbstractTimeAdaptivityController *pController=NULL) | AbstractCardiacProblem< DIM, DIM, 2 > | |
| SetWriteInfo(bool writeInfo=true) | AbstractCardiacProblem< DIM, DIM, 2 > | |
| Solve() | AdaptiveBidomainProblem | |
| TestAdaptiveBidomainProblem (defined in AdaptiveBidomainProblem) | AdaptiveBidomainProblem | [friend] |
| TestAdaptiveBidomainProblemNightly (defined in AdaptiveBidomainProblem) | AdaptiveBidomainProblem | [friend] |
| UseMatrixBasedRhsAssembly(bool useMatrixBasedRhsAssembly=true) | AbstractCardiacProblem< DIM, DIM, 2 > | |
| UseNeumannBoundaryCondition(unsigned index=0) | AdaptiveBidomainProblem | |
| WriteExtraVariablesOneStep() | AbstractCardiacProblem< DIM, DIM, 2 > | |
| WriteInfo(double time) | BidomainProblem< 3 > | [virtual] |
| WriteOneStep(double time, Vec voltageVec) | BidomainProblem< 3 > | [virtual] |
| ~AbstractCardiacProblem() | AbstractCardiacProblem< DIM, DIM, 2 > | [virtual] |
| ~AbstractUntemplatedCardiacProblem() | AbstractUntemplatedCardiacProblem | [inline, virtual] |
| ~AdaptiveBidomainProblem() | AdaptiveBidomainProblem | |
