Here is a list of all documented class members with links to the class documentation for each member:
- A11_matrix_subblock
: PCBlockDiagonal::PCBlockDiagonalContext
, PCLDUFactorisation::PCLDUFactorisationContext
, PCTwoLevelsBlockDiagonal::PCTwoLevelsBlockDiagonalContext
- A11_scatter_ctx
: PCBlockDiagonal::PCBlockDiagonalContext
, PCLDUFactorisation::PCLDUFactorisationContext
, PCTwoLevelsBlockDiagonal::PCTwoLevelsBlockDiagonalContext
- A22_B1_matrix_subblock
: PCTwoLevelsBlockDiagonal::PCTwoLevelsBlockDiagonalContext
- A22_B1_scatter_ctx
: PCTwoLevelsBlockDiagonal::PCTwoLevelsBlockDiagonalContext
- A22_B2_matrix_subblock
: PCTwoLevelsBlockDiagonal::PCTwoLevelsBlockDiagonalContext
- A22_B2_scatter_ctx
: PCTwoLevelsBlockDiagonal::PCTwoLevelsBlockDiagonalContext
- A22_matrix_subblock
: PCBlockDiagonal::PCBlockDiagonalContext
, PCLDUFactorisation::PCLDUFactorisationContext
- A22_scatter_ctx
: PCBlockDiagonal::PCBlockDiagonalContext
, PCLDUFactorisation::PCLDUFactorisationContext
- a6
: Kerchoffs2003ContractionModel
- a7
: Kerchoffs2003ContractionModel
- Abscissa()
: AbstractConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >
, OdeConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >
, OdePdeConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >
, PdeConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >
, SpaceConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >
- Absolute
: RelativeTo
- AbsoluteOrCwd
: RelativeTo
- AbsoluteStimulus
: AbstractUntemplatedConvergenceTester
- AbstractAlgebraicContractionModel()
: AbstractAlgebraicContractionModel
- AbstractAssemblerSolverHybrid()
: AbstractAssemblerSolverHybrid< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, INTERPOLATION_LEVEL >
- AbstractBackwardEulerCardiacCell()
: AbstractBackwardEulerCardiacCell< SIZE >
- AbstractBidomainSolver()
: AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM >
- AbstractBoundaryCondition()
: AbstractBoundaryCondition< SPACE_DIM >
- AbstractBoundaryConditionsContainer()
: AbstractBoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
- AbstractCachedMeshReader()
: AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
- AbstractCardiacCell()
: AbstractCardiacCell
- AbstractCardiacCellFactory()
: AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM >
- AbstractCardiacCellInterface()
: AbstractCardiacCellInterface
- AbstractCardiacCellWithModifiers()
: AbstractCardiacCellWithModifiers< CARDIAC_CELL >
- AbstractCardiacFeObjectAssembler()
: AbstractCardiacFeObjectAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >
- AbstractCardiacMechanicsSolver()
: AbstractCardiacMechanicsSolver< ELASTICITY_SOLVER, DIM >
- AbstractCardiacMechanicsSolverInterface()
: AbstractCardiacMechanicsSolverInterface< DIM >
- AbstractCardiacProblem()
: AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
- AbstractCardiacTissue()
: AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
- AbstractCellCycleModel()
: AbstractCellCycleModel
- AbstractCellCycleModelOdeSolver()
: AbstractCellCycleModelOdeSolver
- AbstractCellKiller()
: AbstractCellKiller< SPACE_DIM >
- AbstractCellMutationState()
: AbstractCellMutationState
- AbstractCellPopulation()
: AbstractCellPopulation< DIM >
- AbstractCellPopulationBoundaryCondition()
: AbstractCellPopulationBoundaryCondition< DIM >
- AbstractCellProperty()
: AbstractCellProperty
- AbstractCentreBasedCellPopulation()
: AbstractCentreBasedCellPopulation< DIM >
- AbstractChasteRegion()
: AbstractChasteRegion< SPACE_DIM >
- AbstractCompressibleMaterialLaw()
: AbstractCompressibleMaterialLaw< DIM >
- AbstractConductivityModifier()
: AbstractConductivityModifier< ELEMENT_DIM, SPACE_DIM >
- AbstractContractionModel()
: AbstractContractionModel
- AbstractCorrectionTermAssembler()
: AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >
- AbstractCryptStatistics()
: AbstractCryptStatistics
- AbstractCvodeCell()
: AbstractCvodeCell
- AbstractDynamicLinearPdeSolver()
: AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
- AbstractElement()
: AbstractElement< ELEMENT_DIM, SPACE_DIM >
- AbstractFeObjectAssembler()
: AbstractFeObjectAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >
- AbstractForce()
: AbstractForce< DIM >
- AbstractHdf5Converter()
: AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >
- AbstractIncompressibleMaterialLaw()
: AbstractIncompressibleMaterialLaw< DIM >
- AbstractIvpOdeSolver()
: AbstractIvpOdeSolver
- AbstractLinearPdeSolver()
: AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
- AbstractLookupTableCollection()
: AbstractLookupTableCollection
- AbstractMaterialLaw()
: AbstractMaterialLaw< DIM >
- AbstractMesh()
: AbstractMesh< ELEMENT_DIM, SPACE_DIM >
- AbstractMeshWriter()
: AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >
- AbstractModifier()
: AbstractModifier
- AbstractMonodomainSolver()
: AbstractMonodomainSolver< ELEMENT_DIM, SPACE_DIM >
- AbstractNonlinearAssemblerSolverHybrid()
: AbstractNonlinearAssemblerSolverHybrid< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
- AbstractNonlinearElasticitySolver()
: AbstractNonlinearElasticitySolver< DIM >
- AbstractOdeBasedCellCycleModel()
: AbstractOdeBasedCellCycleModel
- AbstractOdeBasedContractionModel()
: AbstractOdeBasedContractionModel
- AbstractOdeSystem()
: AbstractOdeSystem
- AbstractOdeSystemForCoupledPdeSystem()
: AbstractOdeSystemForCoupledPdeSystem
- AbstractOdeSystemInformation()
: AbstractOdeSystemInformation
- AbstractOdeSystemWithAnalyticJacobian()
: AbstractOdeSystemWithAnalyticJacobian
- AbstractParameterisedSystem()
: AbstractParameterisedSystem< VECTOR >
- AbstractSimpleCellCycleModel()
: AbstractSimpleCellCycleModel
- AbstractSimpleGenerationBasedCellCycleModel()
: AbstractSimpleGenerationBasedCellCycleModel
- AbstractStaticLinearPdeSolver()
: AbstractStaticLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
- AbstractTetrahedralElement()
: AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >
, AbstractTetrahedralElement< 0, SPACE_DIM >
- AbstractTetrahedralMesh()
: AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- AbstractTetrahedralMeshWriter()
: AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >
- AbstractTimeAdaptivityController()
: AbstractTimeAdaptivityController
- AbstractTwoBodyInteractionForce()
: AbstractTwoBodyInteractionForce< DIM >
- AbstractVanLeeuwen2009WntSwatCellCycleModel()
: AbstractVanLeeuwen2009WntSwatCellCycleModel
- AbstractWntOdeBasedCellCycleModel()
: AbstractWntOdeBasedCellCycleModel
- Adapt()
: AdaptiveTetrahedralMesh
- AdaptiveBidomainProblem()
: AdaptiveBidomainProblem
- AdaptiveTetrahedralMesh()
: AdaptiveTetrahedralMesh
- AdaptMesh()
: AdaptiveBidomainProblem
, AdaptiveTetrahedralMesh
- AddBoundaryElement()
: Node< SPACE_DIM >
- AddCell()
: AbstractCellPopulation< DIM >
, AbstractCentreBasedCellPopulation< DIM >
, MeshBasedCellPopulation< DIM >
, MeshBasedCellPopulationWithGhostNodes< DIM >
, VertexBasedCellPopulation< DIM >
- AddCellData()
: VertexMeshWriter< ELEMENT_DIM, SPACE_DIM >
, VtkMeshWriter< ELEMENT_DIM, SPACE_DIM >
- AddCellKiller()
: CellBasedSimulation< DIM >
- AddCellPopulationBoundaryCondition()
: CellBasedSimulation< DIM >
- AddCellProperty()
: Cell
- AddCurrentSolutionToAdaptiveMesh()
: AdaptiveBidomainProblem
- AddDirichletBoundaryCondition()
: BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
- AddElement()
: Node< SPACE_DIM >
, Box< DIM >
, MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
- AddExtraBoundaryNodes()
: QuadraticMesh< DIM >
- AddFace()
: VertexElement< ELEMENT_DIM, SPACE_DIM >
- AddForce()
: CellBasedSimulation< DIM >
- AddForceContribution()
: WelikyOsterForce< DIM >
, CryptProjectionForce
, LinearSpringWithVariableSpringConstantsForce< DIM >
, VertexCryptBoundaryForce< DIM >
, NagaiHondaForce< DIM >
, AbstractForce< DIM >
, AbstractTwoBodyInteractionForce< DIM >
, ChemotacticForce< DIM >
- AddLhsMultipleValues()
: LinearSystem
- AddModifier()
: AbstractCardiacCellWithModifiers< CARDIAC_CELL >
- AddMultipleValues()
: PetscMatTools
, PetscVecTools
- AddNeumannBoundaryCondition()
: BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
- AddNode()
: AbstractElement< ELEMENT_DIM, SPACE_DIM >
, MutableMesh< ELEMENT_DIM, SPACE_DIM >
, MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
, VertexElement< ELEMENT_DIM, SPACE_DIM >
, VertexElement< 1, SPACE_DIM >
, Cylindrical2dVertexMesh
, AbstractCellPopulation< DIM >
, MeshBasedCellPopulation< DIM >
, NodeBasedCellPopulation< DIM >
, VertexBasedCellPopulation< DIM >
, Cylindrical2dMesh
, Box< DIM >
- AddNodeAttribute()
: Node< SPACE_DIM >
- AddNodesToBoundaryElements()
: QuadraticMesh< DIM >
- AddNodeToBoundaryElement()
: QuadraticMesh< DIM >
- AddPointData()
: AdaptiveTetrahedralMesh
, VertexMeshWriter< ELEMENT_DIM, SPACE_DIM >
, VtkMeshWriter< ELEMENT_DIM, SPACE_DIM >
- AddProperty()
: CellPropertyCollection
- AddProvenance()
: VtkMeshWriter< ELEMENT_DIM, SPACE_DIM >
- AddRhsMultipleValues()
: LinearSystem
- AddScaledVector()
: PetscVecTools
- AddStimulus()
: MultiStimulus
- AddToElement()
: PetscMatTools
, PetscVecTools
- AddToMatrixElement()
: LinearSystem
- AddToRhsVectorElement()
: LinearSystem
- AddTrailingSlash()
: OutputFileHandler
- AddWarning()
: Warnings
- AdjustOdeParameters()
: SingleOdeWntCellCycleModel
, AbstractVanLeeuwen2009WntSwatCellCycleModel
, Alarcon2004OxygenBasedCellCycleModel
, WntCellCycleModel
, CellCycleModelOdeHandler
- AdjustOutOfRangeSlowValues()
: AbstractCardiacCell
- AdjustStepSize()
: RungeKuttaFehlbergIvpOdeSolver
- AdvanceAlongUnlimitedDimension()
: AbstractDataWriter
, ParallelColumnDataWriter
, ColumnDataWriter
, Hdf5DataWriter
- AdvanceOneTimeStep()
: TimeStepper
- AfterSolve()
: CellBasedSimulationWithPdes< DIM >
, CellBasedSimulation< DIM >
, CryptSimulation2d
, VertexCryptSimulation2d
- Alarcon2004OxygenBasedCellCycleModel()
: Alarcon2004OxygenBasedCellCycleModel
- Alarcon2004OxygenBasedCellCycleOdeSystem()
: Alarcon2004OxygenBasedCellCycleOdeSystem
- AllocateMatrixMemory()
: AbstractNonlinearElasticitySolver< DIM >
- AmMaster()
: PetscTools
- AmTopMost()
: PetscTools
- AnalyseMeshForBath()
: BidomainProblem< DIM >
- AnalyticJacobian()
: AbstractOdeSystemWithAnalyticJacobian
, TysonNovak2001OdeSystem
- AnyNonZeroNeumannConditions()
: BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
- ApcOneHitCellMutationState()
: ApcOneHitCellMutationState
- ApcTwoHitCellMutationState()
: ApcTwoHitCellMutationState
- Apd90FirstQn
: AbstractUntemplatedConvergenceTester
- Apd90ThirdQn
: AbstractUntemplatedConvergenceTester
- ApoptoticCellProperty()
: ApoptoticCellProperty
- AppendLocalDataToFiles()
: MeshalyzerMeshWriter< ELEMENT_DIM, SPACE_DIM >
, AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >
- ApplyBoundaryConditions()
: AbstractNonlinearElasticitySolver< DIM >
- ApplyCellPopulationBoundaryConditions()
: CellBasedSimulation< DIM >
, CryptSimulation2d
, CryptSimulation1d
, VertexCryptSimulation2d
- ApplyDirichletConditions()
: AbstractNonlinearAssemblerSolverHybrid< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
- ApplyDirichletToLinearProblem()
: BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
- ApplyDirichletToNonlinearJacobian()
: BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
- ApplyDirichletToNonlinearResidual()
: BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
- ApplyNeummanBoundaryConditionsToVector()
: AbstractFeObjectAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >
- ApplyPermutation()
: Hdf5DataWriter
- ArchiveOpener()
: ArchiveOpener< Archive, Stream >
- AreCellularTransmuralHeterogeneitiesRequested()
: HeartConfig
- AreCryptSectionCellsLabelled()
: AbstractCryptStatistics
- Assemble()
: PetscVecTools
, AbstractFeObjectAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >
- AssembleFinal()
: PetscMatTools
- AssembleFinalLhsMatrix()
: LinearSystem
- AssembleFinalLinearSystem()
: LinearSystem
- AssembleFinalPrecondMatrix()
: LinearSystem
- AssembleIntermediate()
: PetscMatTools
- AssembleIntermediateLhsMatrix()
: LinearSystem
- AssembleIntermediateLinearSystem()
: LinearSystem
- AssembleMatrix()
: AbstractFeObjectAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >
- AssembleOnBoundaryElement()
: NonlinearElasticitySolver< DIM >
, CompressibleNonlinearElasticitySolver< DIM >
- AssembleOnElement()
: AbstractFeObjectAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >
, CompressibleNonlinearElasticitySolver< DIM >
, NonlinearElasticitySolver< DIM >
- AssembleOnSurfaceElement()
: AbstractFeObjectAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >
- AssembleRhsVector()
: LinearSystem
- AssembleSystem()
: CompressibleNonlinearElasticitySolver< DIM >
, NonlinearElasticitySolver< DIM >
, AbstractNonlinearElasticitySolver< DIM >
- AssembleVector()
: AbstractFeObjectAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >
- AtBeginningOfTimestep()
: BidomainProblem< DIM >
, AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
- AttributeValue
: VertexElementData
, ElementData
- AveragedSourcePde()
: AveragedSourcePde< DIM >
- AxisymmetricConductivityTensors()
: AxisymmetricConductivityTensors< ELEMENT_DIM, SPACE_DIM >