AbstractCardiacCellWithModifiers.cpp

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#include "AbstractCardiacCellWithModifiers.hpp"
#include "AbstractCvodeCellWithDataClamp.hpp"
#include "DummyModifier.hpp"

template<class CARDIAC_CELL>
void AbstractCardiacCellWithModifiers<CARDIAC_CELL>::AddModifier(std::string modifierName, boost::shared_ptr<AbstractModifier>& pModifier)
{
    mModifiersMap[modifierName] = &pModifier;
    pModifier = boost::shared_ptr<AbstractModifier>(new DummyModifier()); // This modifier always returns what is passed in.
}

template<class CARDIAC_CELL>
AbstractCardiacCellWithModifiers<CARDIAC_CELL>::AbstractCardiacCellWithModifiers(boost::shared_ptr<AbstractIvpOdeSolver> pOdeSolver,
                                 unsigned numberOfStateVariables,
                                 unsigned voltageIndex,
                                 boost::shared_ptr<AbstractStimulusFunction> pIntracellularStimulus)
    : CARDIAC_CELL(pOdeSolver, numberOfStateVariables, voltageIndex, pIntracellularStimulus)
{
    mModifiersMap.clear();
}

template<class CARDIAC_CELL>
boost::shared_ptr<AbstractModifier> AbstractCardiacCellWithModifiers<CARDIAC_CELL>::GetModifier(const std::string& rModifierName)
{
    if (mModifiersMap.find(rModifierName) == mModifiersMap.end())
    {
        EXCEPTION("There is no modifier called " + rModifierName + " in this model.");
    }
    return *(mModifiersMap[rModifierName]);
}

template<class CARDIAC_CELL>
bool AbstractCardiacCellWithModifiers<CARDIAC_CELL>::HasModifier(const std::string& rModifierName) const
{
    return !(mModifiersMap.find(rModifierName) == mModifiersMap.end());
}

template<class CARDIAC_CELL>
void AbstractCardiacCellWithModifiers<CARDIAC_CELL>::SetModifier(const std::string& rModifierName, boost::shared_ptr<AbstractModifier>& pNewModifier)
{
    if (mModifiersMap.find(rModifierName) == mModifiersMap.end())
    {
        EXCEPTION("There is no modifier called " + rModifierName + " in this model.");
    }
    *(mModifiersMap[rModifierName]) = pNewModifier;
}

// Explicit Instantiation
template class AbstractCardiacCellWithModifiers<AbstractCardiacCell>;
#ifdef CHASTE_CVODE
template class AbstractCardiacCellWithModifiers<AbstractCvodeCell>;
template class AbstractCardiacCellWithModifiers<AbstractCvodeCellWithDataClamp>;
#endif