AbstractCellWriter.hpp

/*

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 * Redistributions in binary form must reproduce the above copyright notice,
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   software without specific prior written permission.

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ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
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*/

#ifndef ABSTRACTCELLWRITER_HPP_
#define ABSTRACTCELLWRITER_HPP_

#include "ChasteSerialization.hpp"
#include <boost/serialization/base_object.hpp>
#include "AbstractCellBasedWriter.hpp"
#include "Cell.hpp"
#include "UblasVectorInclude.hpp"

// Forward declaration prevents circular include chain
template<unsigned ELEMENT_DIM, unsigned SPACE_DIM> class AbstractCellPopulation;

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
class AbstractCellWriter : public AbstractCellBasedWriter<ELEMENT_DIM, SPACE_DIM>
{
private:

    friend class boost::serialization::access;

    template<class Archive>
    void serialize(Archive & archive, const unsigned int version)
    {
        archive & boost::serialization::base_object<AbstractCellBasedWriter<ELEMENT_DIM, SPACE_DIM> >(*this);
        archive & mOutputScalarData;
        archive & mOutputVectorData;
        archive & mVtkCellDataName;
        archive & mVtkVectorCellDataName;
    }

protected:

    bool mOutputScalarData;

    bool mOutputVectorData;

    std::string mVtkCellDataName;

    std::string mVtkVectorCellDataName;

public:

    AbstractCellWriter(const std::string& rFileName);

    virtual double GetCellDataForVtkOutput(CellPtr pCell, AbstractCellPopulation<ELEMENT_DIM, SPACE_DIM>* pCellPopulation);

    virtual c_vector<double, SPACE_DIM> GetVectorCellDataForVtkOutput(CellPtr pCell, AbstractCellPopulation<ELEMENT_DIM, SPACE_DIM>* pCellPopulation);

    virtual void VisitCell(CellPtr pCell, AbstractCellPopulation<ELEMENT_DIM, SPACE_DIM>* pCellPopulation)=0;

    bool GetOutputScalarData();

    bool GetOutputVectorData();

    void SetVtkCellDataName(std::string vtkCellDataName);

    void SetVtkVectorCellDataName(std::string vtkCellDataName);

    std::string GetVtkCellDataName();

    std::string GetVtkVectorCellDataName();
};

#endif /*ABSTRACTCELLWRITER_HPP_*/