AbstractOnLatticeCellPopulation.hpp

/*

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*/

#ifndef ABSTRACTONLATTICECELLPOPULATION_HPP_
#define ABSTRACTONLATTICECELLPOPULATION_HPP_

#include "AbstractCellPopulation.hpp"
#include "AbstractUpdateRule.hpp"

template<unsigned DIM>
class AbstractOnLatticeCellPopulation : public AbstractCellPopulation<DIM>
{
private:

    friend class boost::serialization::access;
    template<class Archive>
    void serialize(Archive & archive, const unsigned int version)
    {
        archive & boost::serialization::base_object<AbstractCellPopulation<DIM> >(*this);
        archive & mUpdateRuleCollection;
        archive & mUpdateNodesInRandomOrder;
        archive & mIterateRandomlyOverUpdateRuleCollection;
    }

protected:

    std::vector<boost::shared_ptr<AbstractUpdateRule<DIM> > > mUpdateRuleCollection;

    bool mDeleteMesh;

    bool mUpdateNodesInRandomOrder;

    bool mIterateRandomlyOverUpdateRuleCollection;

    AbstractOnLatticeCellPopulation(AbstractMesh<DIM, DIM>& rMesh);

public:

    AbstractOnLatticeCellPopulation(AbstractMesh<DIM, DIM>& rMesh,
                                    std::vector<CellPtr>& rCells,
                                    const std::vector<unsigned> locationIndices=std::vector<unsigned>(),
                                    bool deleteMesh=false);

    virtual ~AbstractOnLatticeCellPopulation();

    virtual void UpdateCellLocations(double dt)=0;

    bool GetUpdateNodesInRandomOrder();

    void SetUpdateNodesInRandomOrder(bool updateNodesInRandomOrder);

    void SetIterateRandomlyOverUpdateRuleCollection(bool iterateRandomly);

    bool GetIterateRandomlyOverUpdateRuleCollection();

    void SetNode(unsigned index, ChastePoint<DIM>& rNewLocation);

    std::set<unsigned> GetNeighbouringNodeIndices(unsigned index);

    virtual void OutputCellPopulationParameters(out_stream& rParamsFile);

    virtual double GetDefaultTimeStep();

    virtual void AddUpdateRule(boost::shared_ptr<AbstractUpdateRule<DIM> > pUpdateRule)=0;

    virtual void RemoveAllUpdateRules();

    virtual const std::vector<boost::shared_ptr<AbstractUpdateRule<DIM> > > GetUpdateRuleCollection() const;
};

#endif /*ABSTRACTONLATTICECELLPOPULATION_HPP_*/