CellCycleModelOdeHandler.hpp

/*

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*/

#ifndef CELLCYCLEMODELODEHANDLER_HPP_
#define CELLCYCLEMODELODEHANDLER_HPP_

#include <boost/shared_ptr.hpp>
#include <boost/noncopyable.hpp>

#include "ChasteSerialization.hpp"
#include "AbstractOdeSystem.hpp"
#include "AbstractCellCycleModelOdeSolver.hpp"
#include "SimulationTime.hpp"

class CellCycleModelOdeHandler
{
private:

    friend class boost::serialization::access;
    template<class Archive>
    void serialize(Archive & archive, const unsigned int version)
    {
        archive & mpOdeSystem;
        archive & mpOdeSolver;
        archive & mLastTime;
        archive & mDt;
        archive & mFinishedRunningOdes;
    }

    CellCycleModelOdeHandler& operator=(const AbstractCellCycleModelOdeSolver&);

protected:

    CellCycleModelOdeHandler(const CellCycleModelOdeHandler& rHandler);

    double mDt;

    AbstractOdeSystem* mpOdeSystem;

    boost::shared_ptr<AbstractCellCycleModelOdeSolver> mpOdeSolver;

    double mLastTime;

    bool mFinishedRunningOdes;

    bool SolveOdeToTime(double currentTime);

    virtual void AdjustOdeParameters(double currentTime);

public:

    CellCycleModelOdeHandler(double lastTime = SimulationTime::Instance()->GetTime(),
                             boost::shared_ptr<AbstractCellCycleModelOdeSolver> pOdeSolver = boost::shared_ptr<AbstractCellCycleModelOdeSolver>());

    virtual ~CellCycleModelOdeHandler();

    AbstractOdeSystem* GetOdeSystem() const;

    void SetOdeSystem(AbstractOdeSystem* pOdeSystem);

    const boost::shared_ptr<AbstractCellCycleModelOdeSolver> GetOdeSolver() const;

    void SetLastTime(double lastTime);

    double GetDt();

    void SetDt(double timeStep);

    void SetStateVariables(const std::vector<double>& rStateVariables);

    std::vector<double> GetProteinConcentrations() const;

    void SetProteinConcentrationsForTestsOnly(double lastTime, std::vector<double> proteinConcentrations);
};

#endif /*CELLCYCLEMODELODEHANDLER_HPP_*/