CryptSimulation1d.cpp

/*

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*/

#include "CryptSimulation1d.hpp"
#include "WntConcentration.hpp"
#include "SmartPointers.hpp"

CryptSimulation1d::CryptSimulation1d(AbstractCellPopulation<1>& rCellPopulation,
                  bool deleteCellPopulationInDestructor,
                  bool initialiseCells)
    : OffLatticeSimulation<1>(rCellPopulation,
                          deleteCellPopulationInDestructor,
                          initialiseCells)
{
    mpStaticCastCellPopulation = static_cast<MeshBasedCellPopulation<1>*>(&mrCellPopulation);

    if (!mDeleteCellPopulationInDestructor)
    {
        // Pass a CryptSimulationBoundaryCondition object into mBoundaryConditions
        MAKE_PTR_ARGS(CryptSimulationBoundaryCondition<1>, p_bc, (&rCellPopulation));
        AddCellPopulationBoundaryCondition(p_bc);
    }

    MAKE_PTR(CryptCentreBasedDivisionRule<1>, p_centre_div_rule);
    mpStaticCastCellPopulation->SetCentreBasedDivisionRule(p_centre_div_rule);
}

CryptSimulation1d::~CryptSimulation1d()
{
}

void CryptSimulation1d::OutputSimulationParameters(out_stream& rParamsFile)
{
    // No parameters to output

    // Call method on direct parent class
    OffLatticeSimulation<1>::OutputSimulationParameters(rParamsFile);
}

// Serialization for Boost >= 1.36
#include "SerializationExportWrapperForCpp.hpp"
CHASTE_CLASS_EXPORT(CryptSimulation1d)