MonodomainPurkinjeProblem.hpp

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*/

#ifndef MONODOMAINPURKINJEPROBLEM_HPP_
#define MONODOMAINPURKINJEPROBLEM_HPP_

#include "ChasteSerialization.hpp"
#include <boost/serialization/base_object.hpp>
#include "AbstractCardiacProblem.hpp"
#include "AbstractCardiacTissue.hpp"
#include "AbstractPurkinjeCellFactory.hpp"
#include "MonodomainTissue.hpp"


template<unsigned ELEMENT_DIM, unsigned SPACE_DIM = ELEMENT_DIM>
class MonodomainPurkinjeProblem : public AbstractCardiacProblem<ELEMENT_DIM, SPACE_DIM, 2>
{

    friend class boost::serialization::access;
    template<class Archive>
    void serialize(Archive & archive, const unsigned int version)  // LCOV_EXCL_LINE
    {
        NEVER_REACHED; // If you remove this NEVER_REACHED, then:
        // please remove the //LCOV exclude above and the ones around the default constructor in the .cpp too!


//        archive & mPurkinjeVoltageColumnId;
//        archive & boost::serialization::base_object<AbstractCardiacProblem<ELEMENT_DIM, SPACE_DIM, 2> >(*this);
    }

protected:
    unsigned mPurkinjeVoltageColumnId;

    AbstractCardiacTissue<ELEMENT_DIM, SPACE_DIM>* CreateCardiacTissue();

    AbstractDynamicLinearPdeSolver<ELEMENT_DIM, SPACE_DIM, 2>* CreateSolver();

    virtual void CreateMeshFromHeartConfig();

    Vec CreateInitialCondition();

public:
    MonodomainPurkinjeProblem(AbstractPurkinjeCellFactory<ELEMENT_DIM,SPACE_DIM>* pCellFactory);

    MonodomainPurkinjeProblem();

    virtual ~MonodomainPurkinjeProblem();

    void WriteInfo(double time);

    virtual void DefineWriterColumns(bool extending);

    virtual void WriteOneStep(double time, Vec voltageVec);

};


#include "SerializationExportWrapper.hpp" // Must be last
EXPORT_TEMPLATE_CLASS2(MonodomainPurkinjeProblem, 2, 2)
EXPORT_TEMPLATE_CLASS2(MonodomainPurkinjeProblem, 3, 3)



#endif // MONODOMAINPURKINJEPROBLEM_HPP_