Chaste  Release::2017.1
PlaneBasedCellKiller.hpp
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35 
36 #ifndef PLANEBASEDCELLKILLER_HPP_
37 #define PLANEBASEDCELLKILLER_HPP_
38 
39 #include "AbstractCellKiller.hpp"
40 
41 #include "ChasteSerialization.hpp"
42 #include <boost/serialization/base_object.hpp>
43 #include <boost/serialization/vector.hpp>
44 
50 template<unsigned DIM>
52 {
53 private:
54 
58  c_vector<double, DIM> mPointOnPlane;
59 
63  c_vector<double, DIM> mNormalToPlane;
64 
73  template<class Archive>
74  void serialize(Archive & archive, const unsigned int version)
75  {
76  archive & boost::serialization::base_object<AbstractCellKiller<DIM> >(*this);
77  }
78 
79 public:
80 
89  c_vector<double, DIM> point,
90  c_vector<double, DIM> normal);
91 
95  const c_vector<double, DIM>& rGetPointOnPlane() const;
96 
100  const c_vector<double, DIM>& rGetNormalToPlane() const;
101 
106 
112  void OutputCellKillerParameters(out_stream& rParamsFile);
113 };
114 
117 
118 namespace boost
119 {
120 namespace serialization
121 {
125 template<class Archive, unsigned DIM>
126 inline void save_construct_data(
127  Archive & ar, const PlaneBasedCellKiller<DIM> * t, const unsigned int file_version)
128 {
129  // Save data required to construct instance
130  const AbstractCellPopulation<DIM>* const p_cell_population = t->GetCellPopulation();
131  ar << p_cell_population;
132 
133  // Archive c_vectors one component at a time
134  c_vector<double, DIM> point = t->rGetPointOnPlane();
135  for (unsigned i=0; i<DIM; i++)
136  {
137  ar << point[i];
138  }
139  c_vector<double, DIM> normal = t->rGetNormalToPlane();
140  for (unsigned i=0; i<DIM; i++)
141  {
142  ar << normal[i];
143  }
144 }
145 
149 template<class Archive, unsigned DIM>
150 inline void load_construct_data(
151  Archive & ar, PlaneBasedCellKiller<DIM> * t, const unsigned int file_version)
152 {
153  // Retrieve data from archive required to construct new instance
154  AbstractCellPopulation<DIM>* p_cell_population;
155  ar >> p_cell_population;
156 
157  // Archive c_vectors one component at a time
158  c_vector<double, DIM> point;
159  for (unsigned i=0; i<DIM; i++)
160  {
161  ar >> point[i];
162  }
163  c_vector<double, DIM> normal;
164  for (unsigned i=0; i<DIM; i++)
165  {
166  ar >> normal[i];
167  }
168 
169  // Invoke inplace constructor to initialise instance
170  ::new(t)PlaneBasedCellKiller<DIM>(p_cell_population, point, normal);
171 }
172 }
173 } // namespace ...
174 
175 #endif /*PLANEBASEDCELLKILLER_HPP_*/
virtual void CheckAndLabelCellsForApoptosisOrDeath()
c_vector< double, DIM > mPointOnPlane
void serialize(Archive &archive, const unsigned int version)
const c_vector< double, DIM > & rGetPointOnPlane() const
PlaneBasedCellKiller(AbstractCellPopulation< DIM > *pCellPopulation, c_vector< double, DIM > point, c_vector< double, DIM > normal)
const AbstractCellPopulation< SPACE_DIM > * GetCellPopulation() const
friend class boost::serialization::access
#define EXPORT_TEMPLATE_CLASS_SAME_DIMS(CLASS)
void OutputCellKillerParameters(out_stream &rParamsFile)
const c_vector< double, DIM > & rGetNormalToPlane() const
gcov doesn&#39;t like this file...
c_vector< double, DIM > mNormalToPlane