ZeroNetChargeElectrodes.cpp

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#include "ZeroNetChargeElectrodes.hpp"
#include "ElectrodesStimulusFactory.hpp"
#include "RegularStimulusZeroNetCharge.hpp"
#include "DistributedTetrahedralMesh.hpp"
#include "IsNan.hpp"
#include "HeartConfig.hpp"

template<unsigned DIM>
ZeroNetChargeElectrodes<DIM>::ZeroNetChargeElectrodes(std::vector<std::pair<AbstractChasteRegion<DIM>*, AbstractChasteRegion<DIM>*> >& rElectrodePairs,
                                                          std::vector<double>& rStimulusMagnitudes,
                                                          std::vector<double>& rDurations,
                                                          std::vector<double>& rPeriods,
                                                          std::vector<double>& rStarts,
                                                          std::vector<double>& rEnds)
    : ElectrodesStimulusFactory<DIM>(rElectrodePairs, rStimulusMagnitudes, rDurations, rPeriods, rStarts, rEnds)
{
}

template<unsigned DIM>
ZeroNetChargeElectrodes<DIM>::~ZeroNetChargeElectrodes()
{
}

template<unsigned DIM>
boost::shared_ptr<AbstractStimulusFunction> ZeroNetChargeElectrodes<DIM>::CreateStimulusForNode(Node<DIM>* pNode)
{
    boost::shared_ptr<RegularStimulusZeroNetCharge> p_stimulus;
    for (unsigned pair_index = 0; pair_index < this->mrElectrodePairs.size(); pair_index++)
    {
        if (this->mrElectrodePairs[pair_index].first->DoesContain(pNode->GetPoint()) )
        {
            p_stimulus.reset ( new RegularStimulusZeroNetCharge(this->mMagnitudesElectrode1[pair_index], this->mrDurations[pair_index], this->mrPeriods[pair_index], this->mrStarts[pair_index], this->mrEnds[pair_index]));
        }
        else if (this->mrElectrodePairs[pair_index].second->DoesContain(pNode->GetPoint()) )
        {
            p_stimulus.reset ( new RegularStimulusZeroNetCharge(this->mMagnitudesElectrode2[pair_index], this->mrDurations[pair_index], this->mrPeriods[pair_index], this->mrStarts[pair_index], this->mrEnds[pair_index]));
        }
        else//no stimulus here
        {
            p_stimulus.reset ( new RegularStimulusZeroNetCharge(0.0, this->mrDurations[pair_index], this->mrPeriods[pair_index], this->mrStarts[pair_index], this->mrEnds[pair_index]) );
        }
    }
    return p_stimulus;
}

// Explicit instantiation
template class ZeroNetChargeElectrodes<1>;
template class ZeroNetChargeElectrodes<2>;
template class ZeroNetChargeElectrodes<3>;