Chaste  Release::2017.1
AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM > Member List

This is the complete list of members for AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >, including all inherited members.

AbstractCellPopulation(AbstractMesh< ELEMENT_DIM, SPACE_DIM > &rMesh)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
AbstractCellPopulation(AbstractMesh< ELEMENT_DIM, SPACE_DIM > &rMesh, std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >())AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
AbstractCentreBasedCellPopulation(AbstractMesh< ELEMENT_DIM, SPACE_DIM > &rMesh)AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
AbstractCentreBasedCellPopulation(AbstractMesh< ELEMENT_DIM, SPACE_DIM > &rMesh, std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >())AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
AbstractOffLatticeCellPopulation(AbstractMesh< ELEMENT_DIM, SPACE_DIM > &rMesh)AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
AbstractOffLatticeCellPopulation(AbstractMesh< ELEMENT_DIM, SPACE_DIM > &rMesh, std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >())AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >
AcceptCellWriter(boost::shared_ptr< AbstractCellWriter< ELEMENT_DIM, SPACE_DIM > > pCellWriter, CellPtr pCell)=0AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >pure virtual
AcceptCellWritersAcrossPopulation()AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >protectedvirtual
AcceptPopulationCountWriter(boost::shared_ptr< AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM > > pPopulationCountWriter)=0AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >pure virtual
AcceptPopulationWriter(boost::shared_ptr< AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM > > pPopulationWriter)=0AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >pure virtual
AddCell(CellPtr pNewCell, CellPtr pParentCell=CellPtr())AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
AddCellPopulationCountWriter()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >inline
AddCellPopulationCountWriter(boost::shared_ptr< AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM > > pCellPopulationCountWriter)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >inline
AddCellUsingLocationIndex(unsigned index, CellPtr pCell)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
AddCellWriter()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >inline
AddCellWriter(boost::shared_ptr< AbstractCellWriter< ELEMENT_DIM, SPACE_DIM > > pCellWriter)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >inline
AddNode(Node< SPACE_DIM > *pNewNode)=0AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >pure virtual
AddPopulationWriter()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >inline
AddPopulationWriter(boost::shared_ptr< AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM > > pPopulationWriter)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >inline
Begin()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
boost::serialization::access classAbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >friend
CheckForStepSizeException(unsigned nodeIndex, c_vector< double, SPACE_DIM > &rDisplacement, double dt)AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
CloseWritersFiles()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
CreateCellPair(CellPtr pCell1, CellPtr pCell2)AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
CreateOrderedPair(unsigned index1, unsigned index2)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
End()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetAbsoluteMovementThreshold()AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetCellAncestors()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetCellCyclePhaseCount()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetCellDataItemAtPdeNode(unsigned pdeNodeIndex, std::string &rVariableName, bool dirichletBoundaryConditionApplies=false, double dirichletBoundaryValue=0.0)AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
GetCellMutationStateCount()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetCellProliferativeTypeCount()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetCellPropertyRegistry()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetCellsUsingLocationIndex(unsigned index)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetCellUsingLocationIndex(unsigned index)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
GetCentreBasedDivisionRule()AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetCentroidOfCellPopulation()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetDampingConstant(unsigned nodeIndex)AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
GetDampingConstantMutant()AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetDampingConstantNormal()AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetDefaultTimeStep()AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
GetIdentifier() const Identifiable
GetLocationIndexUsingCell(CellPtr pCell)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetLocationOfCellCentre(CellPtr pCell)AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
GetMeinekeDivisionSeparation()AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetNeighbouringLocationIndices(CellPtr pCell)AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
GetNeighbouringNodeIndices(unsigned index)=0AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >pure virtual
GetNode(unsigned index)=0AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >pure virtual
GetNodeCorrespondingToCell(CellPtr pCell)AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetNumAllCells()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetNumNodes()=0AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >pure virtual
GetNumRealCells()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetOutputResultsForChasteVisualizer()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetSizeOfCellPopulation()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetTetrahedralMeshForPdeModifier()=0AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >pure virtual
GetVolumeOfCell(CellPtr pCell)=0AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >pure virtual
GetWidth(const unsigned &rDimension)=0AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >pure virtual
HasWriter() const AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >inline
InitialiseCells()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
IsCellAssociatedWithADeletedLocation(CellPtr pCell)AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
IsCellAttachedToLocationIndex(unsigned index)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
IsGhostNode(unsigned index)AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
IsMarkedSpring(const std::pair< CellPtr, CellPtr > &rCellPair)AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
IsParticle(unsigned index)AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
IsPdeNodeAssociatedWithNonApoptoticCell(unsigned pdeNodeIndex)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
IsRoomToDivide(CellPtr pCell)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
mAbsoluteMovementThresholdAbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
MarkSpring(std::pair< CellPtr, CellPtr > &rCellPair)AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
mCellLocationMapAbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
mCellPopulationCountWritersAbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
mCellPopulationWritersAbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
mCellsAbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
mCellWritersAbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
mCentroidAbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
mDampingConstantMutantAbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
mDampingConstantNormalAbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
mLocationCellMapAbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
mMarkedSpringsAbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
mMeinekeDivisionSeparationAbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
mOutputResultsForChasteVisualizerAbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
MoveCellInLocationMap(CellPtr pCell, unsigned old_index, unsigned new_index)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
mpCellPropertyRegistryAbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
mpCentreBasedDivisionRuleAbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
mpVtkMetaFileAbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
mrMeshAbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
OpenWritersFiles(OutputFileHandler &rOutputFileHandler)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
OutputCellPopulationInfo(out_stream &rParamsFile)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
OutputCellPopulationParameters(out_stream &rParamsFile)AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
RemoveCellUsingLocationIndex(unsigned index, CellPtr pCell)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
RemoveDeadCells()=0AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >pure virtual
rGetCells()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
rGetMesh()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
rGetNodePairs()=0AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >pure virtual
serialize(Archive &archive, const unsigned int version)AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >inlineprivate
SetAbsoluteMovementThreshold(double absoluteMovementThreshold)AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >
SetCellAncestorsToLocationIndices()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
SetCellUsingLocationIndex(unsigned index, CellPtr pCell)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
SetCentreBasedDivisionRule(boost::shared_ptr< AbstractCentreBasedDivisionRule< ELEMENT_DIM, SPACE_DIM > > pCentreBasedDivisionRule)AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
SetDampingConstantMutant(double dampingConstantMutant)AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >
SetDampingConstantNormal(double dampingConstantNormal)AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >
SetDataOnAllCells(const std::string &rDataName, double dataValue)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
SetDefaultCellMutationStateAndProliferativeTypeOrdering()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
SetMeinekeDivisionSeparation(double divisionSeparation)AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
SetNode(unsigned nodeIndex, ChastePoint< SPACE_DIM > &rNewLocation)=0AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >pure virtual
SetOutputResultsForChasteVisualizer(bool outputResultsForChasteVisualizer)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
SimulationSetupHook(AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > *pSimulation)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
TestCentreBasedDivisionRules classAbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >friend
UnmarkSpring(std::pair< CellPtr, CellPtr > &rCellPair)AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
Update(bool hasHadBirthsOrDeaths=true)=0AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >pure virtual
UpdateCellProcessLocation()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
UpdateNodeLocations(double dt)AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
Validate()=0AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >protectedpure virtual
WriteDataToVisualizerSetupFile(out_stream &pVizSetupFile)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
WriteResultsToFiles(const std::string &rDirectory)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
WriteVtkResultsToFile(const std::string &rDirectory)=0AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >protectedpure virtual
~AbstractCellPopulation()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
~Identifiable()Identifiablevirtual