Chaste  Release::2017.1
Alarcon2004OxygenBasedCellCycleModel Member List

This is the complete list of members for Alarcon2004OxygenBasedCellCycleModel, including all inherited members.

AbstractCellCycleModel(const AbstractCellCycleModel &rModel)AbstractCellCycleModelprotected
AbstractCellCycleModel()AbstractCellCycleModel
AbstractOdeBasedPhaseBasedCellCycleModel(const AbstractOdeBasedPhaseBasedCellCycleModel &rModel)AbstractOdeBasedPhaseBasedCellCycleModelprotected
AbstractOdeBasedPhaseBasedCellCycleModel(double lastTime=SimulationTime::Instance() ->GetTime(), boost::shared_ptr< AbstractCellCycleModelOdeSolver > pOdeSolver=boost::shared_ptr< AbstractCellCycleModelOdeSolver >())AbstractOdeBasedPhaseBasedCellCycleModel
AbstractPhaseBasedCellCycleModel(const AbstractPhaseBasedCellCycleModel &rModel)AbstractPhaseBasedCellCycleModelprotected
AbstractPhaseBasedCellCycleModel()AbstractPhaseBasedCellCycleModel
AdjustOdeParameters(double currentTime)Alarcon2004OxygenBasedCellCycleModelprivatevirtual
Alarcon2004OxygenBasedCellCycleModel(const Alarcon2004OxygenBasedCellCycleModel &rModel)Alarcon2004OxygenBasedCellCycleModelprotected
Alarcon2004OxygenBasedCellCycleModel(boost::shared_ptr< AbstractCellCycleModelOdeSolver > pOdeSolver=boost::shared_ptr< AbstractCellCycleModelOdeSolver >())Alarcon2004OxygenBasedCellCycleModel
boost::serialization::access classAlarcon2004OxygenBasedCellCycleModelfriend
CanCellTerminallyDifferentiate()AbstractCellCycleModelvirtual
CellCycleModelOdeHandler(const CellCycleModelOdeHandler &rHandler)CellCycleModelOdeHandlerprotected
CellCycleModelOdeHandler(double lastTime=SimulationTime::Instance() ->GetTime(), boost::shared_ptr< AbstractCellCycleModelOdeSolver > pOdeSolver=boost::shared_ptr< AbstractCellCycleModelOdeSolver >())CellCycleModelOdeHandler
CreateCellCycleModel()Alarcon2004OxygenBasedCellCycleModelvirtual
GetAge()AbstractCellCycleModel
GetAverageStemCellCycleTime()AbstractPhaseBasedCellCycleModelvirtual
GetAverageTransitCellCycleTime()AbstractPhaseBasedCellCycleModelvirtual
GetBirthTime() const AbstractCellCycleModel
GetCell()AbstractCellCycleModel
GetCurrentCellCyclePhase() const AbstractPhaseBasedCellCycleModel
GetDimension() const AbstractCellCycleModel
GetDt()CellCycleModelOdeHandler
GetG1Duration() const AbstractPhaseBasedCellCycleModelvirtual
GetG2Duration() const AbstractPhaseBasedCellCycleModelvirtual
GetIdentifier() const Identifiable
GetMDuration() const AbstractPhaseBasedCellCycleModelvirtual
GetMinimumGapDuration() const AbstractPhaseBasedCellCycleModel
GetOdeSolver() const CellCycleModelOdeHandler
GetOdeStopTime()AbstractOdeBasedPhaseBasedCellCycleModel
GetOdeSystem() const CellCycleModelOdeHandler
GetProteinConcentrations() const CellCycleModelOdeHandler
GetSDuration() const AbstractPhaseBasedCellCycleModelvirtual
GetSG2MDuration() const AbstractPhaseBasedCellCycleModel
GetStemCellG1Duration() const AbstractPhaseBasedCellCycleModel
GetTransitCellG1Duration() const AbstractPhaseBasedCellCycleModel
Initialise()Alarcon2004OxygenBasedCellCycleModelvirtual
InitialiseDaughterCell()AbstractCellCycleModelvirtual
mBirthTimeAbstractCellCycleModelprotected
mCurrentCellCyclePhaseAbstractPhaseBasedCellCycleModelprotected
mDimensionAbstractCellCycleModelprotected
mDivideTimeAbstractOdeBasedPhaseBasedCellCycleModelprotected
mDtCellCycleModelOdeHandlerprotected
mFinishedRunningOdesCellCycleModelOdeHandlerprotected
mG1DurationAbstractPhaseBasedCellCycleModelprotected
mG2DurationAbstractPhaseBasedCellCycleModelprotected
mG2PhaseStartTimeAbstractOdeBasedPhaseBasedCellCycleModelprotected
mLastTimeCellCycleModelOdeHandlerprotected
mMDurationAbstractPhaseBasedCellCycleModelprotected
mMinimumGapDurationAbstractPhaseBasedCellCycleModelprotected
mpCellAbstractCellCycleModelprotected
mpOdeSolverCellCycleModelOdeHandlerprotected
mpOdeSystemCellCycleModelOdeHandlerprotected
mReadyToDivideAbstractCellCycleModelprotected
mSDurationAbstractPhaseBasedCellCycleModelprotected
mStemCellG1DurationAbstractPhaseBasedCellCycleModelprotected
mTransitCellG1DurationAbstractPhaseBasedCellCycleModelprotected
OutputCellCycleModelInfo(out_stream &rParamsFile)AbstractCellCycleModel
OutputCellCycleModelParameters(out_stream &rParamsFile)Alarcon2004OxygenBasedCellCycleModelvirtual
ReadyToDivide()AbstractPhaseBasedCellCycleModelvirtual
ResetForDivision()Alarcon2004OxygenBasedCellCycleModelvirtual
serialize(Archive &archive, const unsigned int version)Alarcon2004OxygenBasedCellCycleModelinlineprivate
SetBirthTime(double birthTime)AbstractOdeBasedPhaseBasedCellCycleModelvirtual
SetCell(CellPtr pCell)AbstractCellCycleModel
SetDimension(unsigned dimension)AbstractCellCycleModel
SetDt(double timeStep)CellCycleModelOdeHandler
SetG2Duration(double g2Duration)AbstractPhaseBasedCellCycleModel
SetLastTime(double lastTime)CellCycleModelOdeHandler
SetMDuration(double mDuration)AbstractPhaseBasedCellCycleModel
SetMinimumGapDuration(double minimumGapDuration)AbstractPhaseBasedCellCycleModel
SetOdeSystem(AbstractOdeSystem *pOdeSystem)CellCycleModelOdeHandler
SetProteinConcentrationsForTestsOnly(double lastTime, std::vector< double > proteinConcentrations)CellCycleModelOdeHandler
SetSDuration(double sDuration)AbstractPhaseBasedCellCycleModel
SetStateVariables(const std::vector< double > &rStateVariables)CellCycleModelOdeHandler
SetStemCellG1Duration(double stemCellG1Duration)AbstractPhaseBasedCellCycleModelvirtual
SetTransitCellG1Duration(double transitCellG1Duration)AbstractPhaseBasedCellCycleModelvirtual
SolveOdeToTime(double currentTime)CellCycleModelOdeHandlerprotected
UpdateCellCyclePhase()AbstractOdeBasedPhaseBasedCellCycleModelvirtual
~AbstractCellCycleModel()AbstractCellCycleModelvirtual
~AbstractOdeBasedPhaseBasedCellCycleModel()AbstractOdeBasedPhaseBasedCellCycleModelvirtual
~AbstractPhaseBasedCellCycleModel()AbstractPhaseBasedCellCycleModelvirtual
~CellCycleModelOdeHandler()CellCycleModelOdeHandlervirtual
~Identifiable()Identifiablevirtual