Chaste  Release::2017.1
CryptSimulation2d Member List

This is the complete list of members for CryptSimulation2d, including all inherited members.

AbstractCellBasedSimulation(AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > &rCellPopulation, bool deleteCellPopulationInDestructor=false, bool initialiseCells=true)AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM >
AddCellKiller(boost::shared_ptr< AbstractCellKiller< SPACE_DIM > > pCellKiller)AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM >
AddCellPopulationBoundaryCondition(boost::shared_ptr< AbstractCellPopulationBoundaryCondition< ELEMENT_DIM, ELEMENT_DIM > > pBoundaryCondition)OffLatticeSimulation< 2 >
AddForce(boost::shared_ptr< AbstractForce< ELEMENT_DIM, ELEMENT_DIM > > pForce)OffLatticeSimulation< 2 >
AddSimulationModifier(boost::shared_ptr< AbstractCellBasedSimulationModifier< ELEMENT_DIM, SPACE_DIM > > pSimulationModifier)AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM >
ApplyBoundaries(std::map< Node< ELEMENT_DIM > *, c_vector< double, ELEMENT_DIM > > oldNodeLoctions)OffLatticeSimulation< 2 >protected
boost::serialization::access classCryptSimulation2dfriend
CryptSimulation2d(AbstractCellPopulation< 2 > &rCellPopulation, bool deleteCellPopulationInDestructor=false, bool initialiseCells=true)CryptSimulation2d
DoCellBirth()AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM >protectedvirtual
DoCellRemoval()AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM >protected
GetDt()AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM >
GetIdentifier() const Identifiable
GetNodeLocation(const unsigned &rNodeIndex)AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM >
GetNumBirths()AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM >
GetNumDeaths()AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM >
GetNumericalMethod() constOffLatticeSimulation< 2 >
GetOutputCellVelocities()AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM >
GetOutputDirectory()AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM >
GetOutputDivisionLocations()AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM >
GetSimulationModifiers()AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM >
GetUpdateCellPopulationRule()AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM >
mBoundaryConditionsOffLatticeSimulation< 2 >protected
mCellKillersAbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM >protected
mDeleteCellPopulationInDestructorAbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM >protected
mDtAbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM >protected
mEndTimeAbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM >protected
mForceCollectionOffLatticeSimulation< 2 >protected
mInitialiseCellsAbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM >protected
mNoBirthAbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM >protected
mNumBirthsAbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM >protected
mNumDeathsAbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM >protected
mOutputCellVelocitiesAbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM >protected
mOutputDirectoryAbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM >protected
mOutputDivisionLocationsAbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM >protected
mpCellVelocitiesFileAbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM >protected
mpDivisionLocationFileAbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM >protected
mpNumericalMethodOffLatticeSimulation< 2 >protected
mpVizSetupFileAbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM >protected
mrCellPopulationAbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM >protected
mSamplingTimestepMultipleAbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM >protected
mSimulationModifiersAbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM >protected
mSimulationOutputDirectoryAbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM >protected
mUpdateCellPopulationAbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM >protected
mUsingMeshBasedCellPopulationCryptSimulation2dprotected
OffLatticeSimulation(AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > &rCellPopulation, bool deleteCellPopulationInDestructor=false, bool initialiseCells=true)OffLatticeSimulation< 2 >
OutputAdditionalSimulationSetup(out_stream &rParamsFile)OffLatticeSimulation< 2 >virtual
OutputSimulationParameters(out_stream &rParamsFile)CryptSimulation2dvirtual
OutputSimulationSetup()AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM >protected
RemoveAllCellKillers()AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM >
RemoveAllCellPopulationBoundaryConditions()OffLatticeSimulation< 2 >
RemoveAllForces()OffLatticeSimulation< 2 >
RevertToOldLocations(std::map< Node< ELEMENT_DIM > *, c_vector< double, ELEMENT_DIM > > oldNodeLoctions)OffLatticeSimulation< 2 >protected
rGetCellPopulation()AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM >
rGetCellPopulation() constAbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM >
rGetForceCollection() constOffLatticeSimulation< 2 >
serialize(Archive &archive, const unsigned int version)CryptSimulation2dinlineprotected
SetBottomCellAncestors()CryptSimulation2d
SetDt(double dt)AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM >
SetEndTime(double endTime)AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM >
SetNoBirth(bool noBirth)AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM >
SetNumericalMethod(boost::shared_ptr< AbstractNumericalMethod< ELEMENT_DIM, ELEMENT_DIM > > pNumericalMethod)OffLatticeSimulation< 2 >
SetOutputCellVelocities(bool outputCellVelocities)AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM >
SetOutputDirectory(std::string outputDirectory)AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM >
SetOutputDivisionLocations(bool outputDivisionLocations)AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM >
SetSamplingTimestepMultiple(unsigned samplingTimestepMultiple)AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM >
SetUpdateCellPopulationRule(bool updateCellPopulation)AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM >
SetupSolve()CryptSimulation2dprotectedvirtual
Solve()AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM >
StoppingEventHasOccurred()AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM >protectedvirtual
TestCryptSimulation2dWithMeshBasedCellPopulation (defined in CryptSimulation2d)CryptSimulation2dfriend
TestCryptSimulation2dWithVertexBasedCellPopulation (defined in CryptSimulation2d)CryptSimulation2dfriend
UpdateCellLocationsAndTopology()OffLatticeSimulation< 2 >protectedvirtual
UpdateCellPopulation()AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM >protectedvirtual
UseJiggledBottomCells()CryptSimulation2d
WriteVisualizerSetupFile()OffLatticeSimulation< 2 >protectedvirtual
~AbstractCellBasedSimulation()AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM >virtual
~CryptSimulation2d()CryptSimulation2dvirtual
~Identifiable()Identifiablevirtual