| AbstractCardiacProblem(AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM > *pCellFactory) | AbstractCardiacProblem< DIM, DIM, 3 > | |
| AbstractCardiacProblem() | AbstractCardiacProblem< DIM, DIM, 3 > | |
| AddOutputModifier(boost::shared_ptr< AbstractOutputModifier > pOutputModifier) | AbstractCardiacProblem< DIM, DIM, 3 > | inline |
| AnalyseMeshForBath() | ExtendedBidomainProblem< DIM > | protected |
| AtBeginningOfTimestep(double time) | AbstractCardiacProblem< DIM, DIM, 3 > | inlinevirtual |
| boost::serialization::access class | ExtendedBidomainProblem< DIM > | friend |
| CloseFilesAndPostProcess() | AbstractCardiacProblem< DIM, DIM, 3 > | |
| CreateCardiacTissue() | ExtendedBidomainProblem< DIM > | protectedvirtual |
| CreateInitialCondition() | ExtendedBidomainProblem< DIM > | protectedvirtual |
| CreateMeshFromHeartConfig() | AbstractCardiacProblem< DIM, DIM, 3 > | protectedvirtual |
| CreateSolver() | ExtendedBidomainProblem< DIM > | protectedvirtual |
| DefineExtraVariablesWriterColumns(bool extending) | AbstractCardiacProblem< DIM, DIM, 3 > | |
| DefineWriterColumns(bool extending) | ExtendedBidomainProblem< DIM > | virtual |
| ExtendedBidomainProblem(AbstractCardiacCellFactory< DIM > *pCellFactory, AbstractCardiacCellFactory< DIM > *pSecondCellFactory, bool hasBath=false) | ExtendedBidomainProblem< DIM > | |
| ExtendedBidomainProblem() | ExtendedBidomainProblem< DIM > | |
| GetCurrentTime() | AbstractCardiacProblem< DIM, DIM, 3 > | |
| GetDataReader() | AbstractCardiacProblem< DIM, DIM, 3 > | |
| GetExtendedBidomainTissue() | ExtendedBidomainProblem< DIM > | |
| GetHasBath() | ExtendedBidomainProblem< DIM > | virtual |
| GetSolution() | AbstractCardiacProblem< DIM, DIM, 3 > | |
| GetSolutionDistributedVector() | AbstractCardiacProblem< DIM, DIM, 3 > | |
| GetTissue() | AbstractCardiacProblem< DIM, DIM, 3 > | |
| Initialise() | AbstractCardiacProblem< DIM, DIM, 3 > | |
| InitialiseWriter() | AbstractCardiacProblem< DIM, DIM, 3 > | |
| load(Archive &archive, const unsigned int version) | ExtendedBidomainProblem< DIM > | inlineprivate |
| LoadExtraArchive(Archive &archive, unsigned version) | AbstractCardiacProblem< DIM, DIM, 3 > | |
| mAllocatedMemoryForMesh | AbstractCardiacProblem< DIM, DIM, 3 > | protected |
| mAmFirstCell | ExtendedBidomainProblem< DIM > | protected |
| mAmGap | ExtendedBidomainProblem< DIM > | protected |
| mAmSecondCell | ExtendedBidomainProblem< DIM > | protected |
| mApplyAveragePhieZeroConstraintAfterSolving | ExtendedBidomainProblem< DIM > | protected |
| mCmFirstCell | ExtendedBidomainProblem< DIM > | protected |
| mCmSecondCell | ExtendedBidomainProblem< DIM > | protected |
| mCurrentTime | AbstractCardiacProblem< DIM, DIM, 3 > | protected |
| mExtraVariablesId | AbstractCardiacProblem< DIM, DIM, 3 > | protected |
| mFixedExtracellularPotentialNodes | ExtendedBidomainProblem< DIM > | protected |
| mGGap | ExtendedBidomainProblem< DIM > | protected |
| mGgapHeterogeneityRegions | ExtendedBidomainProblem< DIM > | protected |
| mGgapHeterogenousValues | ExtendedBidomainProblem< DIM > | protected |
| mHasBath | ExtendedBidomainProblem< DIM > | protected |
| mHdf5DataWriterChunkSizeAndAlignment | AbstractCardiacProblem< DIM, DIM, 3 > | protected |
| mIntracellularConductivitiesSecondCell | ExtendedBidomainProblem< DIM > | protected |
| mMeshFilename | AbstractCardiacProblem< DIM, DIM, 3 > | protected |
| mNodeColumnId | AbstractCardiacProblem< DIM, DIM, 3 > | protected |
| mNodesToOutput | AbstractCardiacProblem< DIM, DIM, 3 > | protected |
| mOutputModifiers | AbstractCardiacProblem< DIM, DIM, 3 > | protected |
| mpBoundaryConditionsContainer | AbstractCardiacProblem< DIM, DIM, 3 > | protected |
| mpCardiacTissue | AbstractCardiacProblem< DIM, DIM, 3 > | protected |
| mpCellFactory | AbstractCardiacProblem< DIM, DIM, 3 > | protected |
| mpDefaultBoundaryConditionsContainer | AbstractCardiacProblem< DIM, DIM, 3 > | protected |
| mpExtendedBidomainTissue | ExtendedBidomainProblem< DIM > | protected |
| mpExtracellularStimulusFactory | ExtendedBidomainProblem< DIM > | protected |
| mpMesh | AbstractCardiacProblem< DIM, DIM, 3 > | protected |
| mPrintOutput | AbstractCardiacProblem< DIM, DIM, 3 > | protected |
| mpSecondCellFactory | ExtendedBidomainProblem< DIM > | protected |
| mpSolver | ExtendedBidomainProblem< DIM > | protected |
| mpTimeAdaptivityController | AbstractCardiacProblem< DIM, DIM, 3 > | protected |
| mpWriter | AbstractCardiacProblem< DIM, DIM, 3 > | protected |
| mRowForAverageOfPhiZeroed | ExtendedBidomainProblem< DIM > | protected |
| mSolution | AbstractCardiacProblem< DIM, DIM, 3 > | protected |
| mTimeColumnId | AbstractCardiacProblem< DIM, DIM, 3 > | protected |
| mUseHdf5DataWriterCache | AbstractCardiacProblem< DIM, DIM, 3 > | protected |
| mUserHasSetBidomainValuesExplicitly | ExtendedBidomainProblem< DIM > | protected |
| mUserSpecifiedSecondCellConductivities | ExtendedBidomainProblem< DIM > | protected |
| mUserSuppliedExtracellularStimulus | ExtendedBidomainProblem< DIM > | protected |
| mVariablesIDs | ExtendedBidomainProblem< DIM > | protected |
| mVoltageColumnId | AbstractCardiacProblem< DIM, DIM, 3 > | protected |
| mVoltageColumnId_Phie | ExtendedBidomainProblem< DIM > | protected |
| mVoltageColumnId_Vm1 | ExtendedBidomainProblem< DIM > | protected |
| mVoltageColumnId_Vm2 | ExtendedBidomainProblem< DIM > | protected |
| mWriteInfo | AbstractCardiacProblem< DIM, DIM, 3 > | protected |
| OnEndOfTimestep(double time) | AbstractCardiacProblem< DIM, DIM, 3 > | inlinevirtual |
| PreSolveChecks() | ExtendedBidomainProblem< DIM > | virtual |
| PrintOutput(bool rPrintOutput) | AbstractCardiacProblem< DIM, DIM, 3 > | |
| ProcessExtracellularStimulus() | ExtendedBidomainProblem< DIM > | protected |
| rGetMesh() | AbstractCardiacProblem< DIM, DIM, 3 > | |
| save(Archive &archive, const unsigned int version) const | ExtendedBidomainProblem< DIM > | inlineprivate |
| SetBoundaryConditionsContainer(BccType pBcc) | AbstractCardiacProblem< DIM, DIM, 3 > | |
| SetElectrodes() | AbstractCardiacProblem< DIM, DIM, 3 > | virtual |
| SetExtendedBidomainParameters(double Am1, double Am2, double AmGap, double Cm1, double Cm2, double Ggap) | ExtendedBidomainProblem< DIM > | |
| SetExtracellularStimulusFactory(AbstractStimulusFactory< DIM > *pFactory) | ExtendedBidomainProblem< DIM > | |
| SetFixedExtracellularPotentialNodes(std::vector< unsigned > nodes) | ExtendedBidomainProblem< DIM > | |
| SetGgapHeterogeneities(std::vector< boost::shared_ptr< AbstractChasteRegion< DIM > > > &rGgapHeterogeneityRegions, std::vector< double > &rGgapValues) | ExtendedBidomainProblem< DIM > | |
| SetHasBath(bool hasBath) | ExtendedBidomainProblem< DIM > | |
| SetHdf5DataWriterTargetChunkSizeAndAlignment(hsize_t size) | AbstractCardiacProblem< DIM, DIM, 3 > | |
| SetIntracellularConductivitiesForSecondCell(c_vector< double, DIM > conductivities) | ExtendedBidomainProblem< DIM > | |
| SetMesh(AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh) | AbstractCardiacProblem< DIM, DIM, 3 > | |
| SetNodeForAverageOfPhiZeroed(unsigned node) | ExtendedBidomainProblem< DIM > | |
| SetNodesPerProcessorFilename(const std::string &rFilename) | AbstractCardiacProblem< DIM, DIM, 3 > | |
| SetOutputNodes(std::vector< unsigned > &rNodesToOutput) | AbstractCardiacProblem< DIM, DIM, 3 > | |
| SetUpAdditionalStoppingTimes(std::vector< double > &rAdditionalStoppingTimes) | AbstractCardiacProblem< DIM, DIM, 3 > | inlinevirtual |
| SetUseHdf5DataWriterCache(bool useCache=true) | AbstractCardiacProblem< DIM, DIM, 3 > | |
| SetUseTimeAdaptivityController(bool useAdaptivity, AbstractTimeAdaptivityController *pController=NULL) | AbstractCardiacProblem< DIM, DIM, 3 > | |
| SetWriteInfo(bool writeInfo=true) | AbstractCardiacProblem< DIM, DIM, 3 > | |
| Solve() | AbstractCardiacProblem< DIM, DIM, 3 > | |
| TestArchivingExtendedBidomain (defined in ExtendedBidomainProblem< DIM >) | ExtendedBidomainProblem< DIM > | friend |
| WriteExtraVariablesOneStep() | AbstractCardiacProblem< DIM, DIM, 3 > | |
| WriteInfo(double time) | ExtendedBidomainProblem< DIM > | virtual |
| WriteOneStep(double time, Vec voltageVec) | ExtendedBidomainProblem< DIM > | virtual |
| ~AbstractCardiacProblem() | AbstractCardiacProblem< DIM, DIM, 3 > | virtual |
| ~AbstractUntemplatedCardiacProblem() | AbstractUntemplatedCardiacProblem | inlinevirtual |
| ~ExtendedBidomainProblem() | ExtendedBidomainProblem< DIM > | virtual |
1.8.11