Chaste  Release::2017.1
MeshBasedCellPopulationWithGhostNodes< DIM > Member List

This is the complete list of members for MeshBasedCellPopulationWithGhostNodes< DIM >, including all inherited members.

AbstractCellPopulation(AbstractMesh< ELEMENT_DIM, SPACE_DIM > &rMesh)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
AbstractCellPopulation(AbstractMesh< ELEMENT_DIM, SPACE_DIM > &rMesh, std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >())AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
AbstractCentreBasedCellPopulation(AbstractMesh< ELEMENT_DIM, SPACE_DIM > &rMesh)AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
AbstractCentreBasedCellPopulation(AbstractMesh< ELEMENT_DIM, SPACE_DIM > &rMesh, std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >())AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
AbstractOffLatticeCellPopulation(AbstractMesh< ELEMENT_DIM, SPACE_DIM > &rMesh)AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
AbstractOffLatticeCellPopulation(AbstractMesh< ELEMENT_DIM, SPACE_DIM > &rMesh, std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >())AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >
AcceptCellWriter(boost::shared_ptr< AbstractCellWriter< ELEMENT_DIM, ELEMENT_DIM > > pCellWriter, CellPtr pCell)MeshBasedCellPopulation< DIM >virtual
AbstractCentreBasedCellPopulation::AcceptCellWriter(boost::shared_ptr< AbstractCellWriter< ELEMENT_DIM, SPACE_DIM > > pCellWriter, CellPtr pCell)=0AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >pure virtual
AcceptCellWritersAcrossPopulation()MeshBasedCellPopulationWithGhostNodes< DIM >protectedvirtual
AcceptPopulationCountWriter(boost::shared_ptr< AbstractCellPopulationCountWriter< ELEMENT_DIM, ELEMENT_DIM > > pPopulationCountWriter)MeshBasedCellPopulation< DIM >virtual
AbstractCentreBasedCellPopulation::AcceptPopulationCountWriter(boost::shared_ptr< AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM > > pPopulationCountWriter)=0AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >pure virtual
AcceptPopulationWriter(boost::shared_ptr< AbstractCellPopulationWriter< ELEMENT_DIM, ELEMENT_DIM > > pPopulationWriter)MeshBasedCellPopulation< DIM >virtual
AbstractCentreBasedCellPopulation::AcceptPopulationWriter(boost::shared_ptr< AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM > > pPopulationWriter)=0AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >pure virtual
AddCell(CellPtr pNewCell, CellPtr pParentCell)MeshBasedCellPopulationWithGhostNodes< DIM >virtual
AddCellPopulationCountWriter()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >inline
AddCellPopulationCountWriter(boost::shared_ptr< AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM > > pCellPopulationCountWriter)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >inline
AddCellUsingLocationIndex(unsigned index, CellPtr pCell)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
AddCellWriter()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >inline
AddCellWriter(boost::shared_ptr< AbstractCellWriter< ELEMENT_DIM, SPACE_DIM > > pCellWriter)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >inline
AddNode(Node< ELEMENT_DIM > *pNewNode)MeshBasedCellPopulation< DIM >
AbstractCentreBasedCellPopulation::AddNode(Node< SPACE_DIM > *pNewNode)=0AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >pure virtual
AddPopulationWriter()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >inline
AddPopulationWriter(boost::shared_ptr< AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM > > pPopulationWriter)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >inline
ApplyGhostForces()MeshBasedCellPopulationWithGhostNodes< DIM >
Begin()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
boost::serialization::access classMeshBasedCellPopulationWithGhostNodes< DIM >friend
CalculateForceBetweenGhostNodes(const unsigned &rNodeAGlobalIndex, const unsigned &rNodeBGlobalIndex)MeshBasedCellPopulationWithGhostNodes< DIM >
CalculateRestLengths()MeshBasedCellPopulation< DIM >
CheckCellPointers()MeshBasedCellPopulation< DIM >
CheckForStepSizeException(unsigned nodeIndex, c_vector< double, SPACE_DIM > &rDisplacement, double dt)AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
CloseWritersFiles()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
CreateCellPair(CellPtr pCell1, CellPtr pCell2)AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
CreateOrderedPair(unsigned index1, unsigned index2)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
CreateVoronoiTessellation()MeshBasedCellPopulation< DIM >
DivideLongSprings(double springDivisionThreshold)MeshBasedCellPopulation< DIM >
End()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetAbsoluteMovementThreshold()AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetAreaBasedDampingConstantParameter()MeshBasedCellPopulation< DIM >
GetCellAncestors()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetCellCyclePhaseCount()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetCellDataItemAtPdeNode(unsigned pdeNodeIndex, std::string &rVariableName, bool dirichletBoundaryConditionApplies=false, double dirichletBoundaryValue=0.0)AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
GetCellMutationStateCount()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetCellProliferativeTypeCount()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetCellPropertyRegistry()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetCellsUsingLocationIndex(unsigned index)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetCellUsingLocationIndex(unsigned index)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
GetCentreBasedDivisionRule()AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetCentroidOfCellPopulation()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetDampingConstant(unsigned nodeIndex)MeshBasedCellPopulation< DIM >virtual
GetDampingConstantMutant()AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetDampingConstantNormal()AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetDefaultTimeStep()AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
GetGhostNodeIndices()MeshBasedCellPopulationWithGhostNodes< DIM >
GetIdentifier() const Identifiable
GetLocationIndexUsingCell(CellPtr pCell)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetLocationOfCellCentre(CellPtr pCell)AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
GetMeinekeDivisionSeparation()AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetNeighbouringLocationIndices(CellPtr pCell)MeshBasedCellPopulationWithGhostNodes< DIM >virtual
GetNeighbouringNodeIndices(unsigned index)MeshBasedCellPopulation< DIM >virtual
GetNode(unsigned index)MeshBasedCellPopulation< DIM >virtual
GetNodeCorrespondingToCell(CellPtr pCell)AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetNumAllCells()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetNumNodes()MeshBasedCellPopulation< DIM >virtual
GetNumRealCells()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetOutputMeshInVtk()MeshBasedCellPopulation< DIM >
GetOutputResultsForChasteVisualizer()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetRestLength(unsigned indexA, unsigned indexB)MeshBasedCellPopulation< DIM >
GetSizeOfCellPopulation()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetSurfaceAreaOfVoronoiElement(unsigned index)MeshBasedCellPopulation< DIM >
GetTetrahedralMeshForPdeModifier()MeshBasedCellPopulationWithGhostNodes< DIM >virtual
GetVolumeOfCell(CellPtr pCell)MeshBasedCellPopulation< DIM >virtual
GetVolumeOfVoronoiElement(unsigned index)MeshBasedCellPopulation< DIM >
GetVoronoiEdgeLength(unsigned index1, unsigned index2)MeshBasedCellPopulation< DIM >
GetVoronoiTessellation()MeshBasedCellPopulation< DIM >
GetWidth(const unsigned &rDimension)MeshBasedCellPopulation< DIM >virtual
GetWriteVtkAsPoints()MeshBasedCellPopulation< DIM >
HasWriter() const AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >inline
InitialiseCells()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
IsCellAssociatedWithADeletedLocation(CellPtr pCell)AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
IsCellAttachedToLocationIndex(unsigned index)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
IsGhostNode(unsigned index)MeshBasedCellPopulationWithGhostNodes< DIM >virtual
IsMarkedSpring(const std::pair< CellPtr, CellPtr > &rCellPair)AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
IsParticle(unsigned index)AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
IsPdeNodeAssociatedWithNonApoptoticCell(unsigned pdeNodeIndex)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
IsRoomToDivide(CellPtr pCell)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
mAbsoluteMovementThresholdAbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
mAreaBasedDampingConstantParameterMeshBasedCellPopulation< DIM >protected
MarkSpring(std::pair< CellPtr, CellPtr > &rCellPair)AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
mCellLocationMapAbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
mCellPopulationCountWritersAbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
mCellPopulationWritersAbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
mCellsAbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
mCellWritersAbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
mCentroidAbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
mDampingConstantMutantAbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
mDampingConstantNormalAbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
mDeleteMeshMeshBasedCellPopulation< DIM >protected
MeshBasedCellPopulation(MutableMesh< ELEMENT_DIM, ELEMENT_DIM > &rMesh, std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >(), bool deleteMesh=false, bool validate=true)MeshBasedCellPopulation< DIM >
MeshBasedCellPopulation(MutableMesh< ELEMENT_DIM, ELEMENT_DIM > &rMesh)MeshBasedCellPopulation< DIM >
MeshBasedCellPopulationWithGhostNodes(MutableMesh< DIM, DIM > &rMesh, std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >(), bool deleteMesh=false, double ghostSpringStiffness=15.0)MeshBasedCellPopulationWithGhostNodes< DIM >
MeshBasedCellPopulationWithGhostNodes(MutableMesh< DIM, DIM > &rMesh, double ghostSpringStiffness=15.0)MeshBasedCellPopulationWithGhostNodes< DIM >
mGhostSpringStiffnessMeshBasedCellPopulationWithGhostNodes< DIM >private
mHasVariableRestLengthMeshBasedCellPopulation< DIM >protected
mIsGhostNodeMeshBasedCellPopulationWithGhostNodes< DIM >private
mLocationCellMapAbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
mMarkedSpringsAbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
mMeinekeDivisionSeparationAbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
mNodePairsMeshBasedCellPopulation< DIM >protected
mOutputMeshInVtkMeshBasedCellPopulation< DIM >protected
mOutputResultsForChasteVisualizerAbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
MoveCellInLocationMap(CellPtr pCell, unsigned old_index, unsigned new_index)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
mpCellPropertyRegistryAbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
mpCentreBasedDivisionRuleAbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
mpMutableMeshMeshBasedCellPopulation< DIM >protected
mpVoronoiTessellationMeshBasedCellPopulation< DIM >protected
mpVtkMetaFileAbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
mrMeshAbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
mSpringRestLengthsMeshBasedCellPopulation< DIM >protected
mUseAreaBasedDampingConstantMeshBasedCellPopulation< DIM >protected
mWriteVtkAsPointsMeshBasedCellPopulation< DIM >protected
OpenWritersFiles(OutputFileHandler &rOutputFileHandler)MeshBasedCellPopulationWithGhostNodes< DIM >virtual
OutputCellPopulationInfo(out_stream &rParamsFile)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
OutputCellPopulationParameters(out_stream &rParamsFile)MeshBasedCellPopulationWithGhostNodes< DIM >virtual
RemoveCellUsingLocationIndex(unsigned index, CellPtr pCell)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
RemoveDeadCells()MeshBasedCellPopulation< DIM >virtual
rGetCells()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
rGetGhostNodes()MeshBasedCellPopulationWithGhostNodes< DIM >
rGetMesh()MeshBasedCellPopulation< DIM >
rGetMesh() constMeshBasedCellPopulation< DIM >
rGetNodePairs()MeshBasedCellPopulation< DIM >virtual
serialize(Archive &archive, const unsigned int version)MeshBasedCellPopulationWithGhostNodes< DIM >inlineprivate
SetAbsoluteMovementThreshold(double absoluteMovementThreshold)AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >
SetAreaBasedDampingConstant(bool useAreaBasedDampingConstant)MeshBasedCellPopulation< DIM >
SetAreaBasedDampingConstantParameter(double areaBasedDampingConstantParameter)MeshBasedCellPopulation< DIM >
SetCellAncestorsToLocationIndices()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
SetCellUsingLocationIndex(unsigned index, CellPtr pCell)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
SetCentreBasedDivisionRule(boost::shared_ptr< AbstractCentreBasedDivisionRule< ELEMENT_DIM, SPACE_DIM > > pCentreBasedDivisionRule)AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
SetDampingConstantMutant(double dampingConstantMutant)AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >
SetDampingConstantNormal(double dampingConstantNormal)AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >
SetDataOnAllCells(const std::string &rDataName, double dataValue)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
SetDefaultCellMutationStateAndProliferativeTypeOrdering()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
SetGhostNodes(const std::set< unsigned > &rGhostNodeIndices)MeshBasedCellPopulationWithGhostNodes< DIM >private
SetMeinekeDivisionSeparation(double divisionSeparation)AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
SetNode(unsigned nodeIndex, ChastePoint< ELEMENT_DIM > &rNewLocation)MeshBasedCellPopulation< DIM >
AbstractCentreBasedCellPopulation::SetNode(unsigned nodeIndex, ChastePoint< SPACE_DIM > &rNewLocation)=0AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >pure virtual
SetOutputMeshInVtk(bool outputMeshInVtk)MeshBasedCellPopulation< DIM >
SetOutputResultsForChasteVisualizer(bool outputResultsForChasteVisualizer)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
SetRestLength(unsigned indexA, unsigned indexB, double restLength)MeshBasedCellPopulation< DIM >
SetWriteVtkAsPoints(bool writeVtkAsPoints)MeshBasedCellPopulation< DIM >
SimulationSetupHook(AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > *pSimulation)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
SpringsBegin()MeshBasedCellPopulation< DIM >
SpringsEnd()MeshBasedCellPopulation< DIM >
TessellateIfNeeded()MeshBasedCellPopulation< DIM >
TestMeshBasedCellPopulationWithGhostNodes classMeshBasedCellPopulationWithGhostNodes< DIM >friend
UnmarkSpring(std::pair< CellPtr, CellPtr > &rCellPair)AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
Update(bool hasHadBirthsOrDeaths=true)MeshBasedCellPopulation< DIM >virtual
UpdateCellProcessLocation()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
UpdateGhostNodesAfterReMesh(NodeMap &rMap)MeshBasedCellPopulationWithGhostNodes< DIM >virtual
UpdateNodeLocations(double dt)AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
UseAreaBasedDampingConstant()MeshBasedCellPopulation< DIM >
Validate()MeshBasedCellPopulationWithGhostNodes< DIM >privatevirtual
WriteDataToVisualizerSetupFile(out_stream &pVizSetupFile)MeshBasedCellPopulation< DIM >virtual
WriteResultsToFiles(const std::string &rDirectory)MeshBasedCellPopulation< DIM >virtual
WriteVtkResultsToFile(const std::string &rDirectory)MeshBasedCellPopulationWithGhostNodes< DIM >virtual
~AbstractCellPopulation()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
~Identifiable()Identifiablevirtual
~MeshBasedCellPopulation()MeshBasedCellPopulation< DIM >virtual
~MeshBasedCellPopulationWithGhostNodes()MeshBasedCellPopulationWithGhostNodes< DIM >virtual