AbstractCellCycleModel.cpp

/*

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*/

#include "AbstractCellCycleModel.hpp"

AbstractCellCycleModel::AbstractCellCycleModel()
    : mBirthTime(SimulationTime::Instance()->GetTime()),
      mReadyToDivide(false),
      mDimension(UNSIGNED_UNSET)
{
}

AbstractCellCycleModel::~AbstractCellCycleModel()
{
}

AbstractCellCycleModel::AbstractCellCycleModel(const AbstractCellCycleModel& rModel)
    : mBirthTime(rModel.mBirthTime),
      mReadyToDivide(rModel.mReadyToDivide),
      mDimension(rModel.mDimension)
{
}

void AbstractCellCycleModel::Initialise()
{
}

void AbstractCellCycleModel::InitialiseDaughterCell()
{
}

void AbstractCellCycleModel::SetCell(CellPtr pCell)
{
    mpCell = pCell;
}

CellPtr AbstractCellCycleModel::GetCell()
{
    assert(mpCell != nullptr);
    return mpCell;
}

void AbstractCellCycleModel::SetBirthTime(double birthTime)
{
    mBirthTime = birthTime;
}

double AbstractCellCycleModel::GetBirthTime() const
{
    return mBirthTime;
}

double AbstractCellCycleModel::GetAge()
{
    return SimulationTime::Instance()->GetTime() - mBirthTime;
}

void AbstractCellCycleModel::ResetForDivision()
{
    assert(mReadyToDivide);
    mReadyToDivide = false;
    mBirthTime = SimulationTime::Instance()->GetTime();
}

void AbstractCellCycleModel::SetDimension(unsigned dimension)
{
    if (dimension != 1 && dimension !=2 && dimension != 3 && dimension != UNSIGNED_UNSET)
    {
        EXCEPTION("Dimension must be 1, 2, 3 or UNSIGNED_UNSET");
    }
    mDimension = dimension;
}

unsigned AbstractCellCycleModel::GetDimension() const
{
    return mDimension;
}

bool AbstractCellCycleModel::CanCellTerminallyDifferentiate()
{
    return true;
}

void AbstractCellCycleModel::OutputCellCycleModelInfo(out_stream& rParamsFile)
{
    std::string cell_cycle_model_type = GetIdentifier();

    *rParamsFile << "\t\t<" << cell_cycle_model_type << ">\n";
    OutputCellCycleModelParameters(rParamsFile);
    *rParamsFile << "\t\t</" << cell_cycle_model_type << ">\n";
}

void AbstractCellCycleModel::OutputCellCycleModelParameters(out_stream& rParamsFile)
{
 // None to output
}