AbstractCvodeCellWithDataClamp.hpp

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#ifdef CHASTE_CVODE
#ifndef _ABSTRACTCVODECELLWITHDATACLAMP_HPP_
#define _ABSTRACTCVODECELLWITHDATACLAMP_HPP_

#include "AbstractCvodeCell.hpp"

class AbstractCvodeCellWithDataClamp : public AbstractCvodeCell
{
private:
    friend class TestCvodeCellsWithDataClamp;

    friend class boost::serialization::access;

    template<class Archive>
    void serialize(Archive & archive, const unsigned int version)
    {
        // This calls serialize on the base class.
        archive & boost::serialization::base_object<AbstractCvodeCell>(*this);

        // Archive this class' member variables.
        archive & mExperimentalTimes;
        archive & mExperimentalVoltages;
        archive & mDataClampIsOn;
        archive & mDataAvailable;
    }

    std::vector<double> mExperimentalTimes;

    std::vector<double> mExperimentalVoltages;

    bool mDataAvailable;

protected:

    bool mDataClampIsOn;

    double GetExperimentalVoltageAtTimeT(const double& rTime);

public:
    AbstractCvodeCellWithDataClamp(boost::shared_ptr<AbstractIvpOdeSolver> pSolver,
                                   unsigned numberOfStateVariables,
                                   unsigned voltageIndex,
                                   boost::shared_ptr<AbstractStimulusFunction> pIntracellularStimulus);

    virtual ~AbstractCvodeCellWithDataClamp();

    void SetExperimentalData(std::vector<double> experimentalTimes,
                             std::vector<double> experimentalVoltages);


    void TurnOffDataClamp();

    void TurnOnDataClamp(double conductance = 100);
};

CLASS_IS_ABSTRACT(AbstractCvodeCellWithDataClamp)

#endif // _ABSTRACTCVODECELLWITHDATACLAMP_HPP_
#endif // CHASTE_CVODE