AbstractMeshReader.cpp

/*

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*/
#include <cassert>
#include "AbstractMeshReader.hpp"
#include "Exception.hpp"

// Implementation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
unsigned AbstractMeshReader<ELEMENT_DIM, SPACE_DIM>::GetNumElementAttributes() const
{
    // By default returns 0.  If a concrete class does read attributes
    // it needs to overload this method.
    return 0;
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
unsigned AbstractMeshReader<ELEMENT_DIM, SPACE_DIM>::GetNumEdges() const
{
    return GetNumFaces();
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
unsigned AbstractMeshReader<ELEMENT_DIM, SPACE_DIM>::GetNumFaceAttributes() const
{
    // By default returns 0.  If a concrete class does read attributes
    // it needs to overload this method.
    return 0;
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
std::vector<double> AbstractMeshReader<ELEMENT_DIM, SPACE_DIM>::GetNodeAttributes()
{
    // By default returns an empty vector.  If a concrete class does read node attributes
    // it needs to overload this method.
    std::vector<double> empty;
    return empty;
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
ElementData AbstractMeshReader<ELEMENT_DIM, SPACE_DIM>::GetNextEdgeData()
{
    return GetNextFaceData();
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
std::vector<double> AbstractMeshReader<ELEMENT_DIM, SPACE_DIM>::GetNode(unsigned index)
{
    EXCEPTION("Random access is only implemented in mesh readers for binary mesh files.");
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
ElementData AbstractMeshReader<ELEMENT_DIM, SPACE_DIM>::GetElementData(unsigned index)
{
    EXCEPTION("Random access is only implemented in mesh readers for binary mesh files.");
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
ElementData AbstractMeshReader<ELEMENT_DIM, SPACE_DIM>::GetFaceData(unsigned index)
{
    EXCEPTION("Random access is only implemented in mesh readers for binary mesh files.");
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
ElementData AbstractMeshReader<ELEMENT_DIM, SPACE_DIM>::GetEdgeData(unsigned index)
{
    return GetFaceData(index);
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
std::vector<unsigned> AbstractMeshReader<ELEMENT_DIM, SPACE_DIM>::GetContainingElementIndices(unsigned index)
{
    EXCEPTION("Ncl files are only implemented in mesh readers for binary mesh files.");
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
std::string AbstractMeshReader<ELEMENT_DIM, SPACE_DIM>::GetMeshFileBaseName()
{
    return "";
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
unsigned AbstractMeshReader<ELEMENT_DIM, SPACE_DIM>::GetOrderOfElements()
{
    return 1u;
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
unsigned AbstractMeshReader<ELEMENT_DIM, SPACE_DIM>::GetOrderOfBoundaryElements()
{
    return 1u;
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
bool AbstractMeshReader<ELEMENT_DIM, SPACE_DIM>::GetReadContainingElementOfBoundaryElement()
{
    return false;
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
bool AbstractMeshReader<ELEMENT_DIM, SPACE_DIM>::IsFileFormatBinary()
{
    return false;
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
bool AbstractMeshReader<ELEMENT_DIM, SPACE_DIM>::HasNclFile()
{
    return false;
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
bool AbstractMeshReader<ELEMENT_DIM, SPACE_DIM>::HasNodePermutation()
{
    return false;
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
const std::vector<unsigned>& AbstractMeshReader<ELEMENT_DIM, SPACE_DIM>::rGetNodePermutation()
{
    EXCEPTION("Node permutations aren't supported by this reader");
}

// Cable elements aren't supported in most formats

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
unsigned AbstractMeshReader<ELEMENT_DIM, SPACE_DIM>::GetNumCableElements() const
{
    return 0u;
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
unsigned AbstractMeshReader<ELEMENT_DIM, SPACE_DIM>::GetNumCableElementAttributes() const
{
    return 0u;
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
ElementData AbstractMeshReader<ELEMENT_DIM, SPACE_DIM>::GetNextCableElementData()
{
    EXCEPTION("Cable elements are not supported by this mesh format.");
}


// Iterator-related methods

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
typename AbstractMeshReader<ELEMENT_DIM, SPACE_DIM>::ElementIterator
    AbstractMeshReader<ELEMENT_DIM, SPACE_DIM>::GetElementIteratorBegin()
{
    return ElementIterator(0u, this);
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
typename AbstractMeshReader<ELEMENT_DIM, SPACE_DIM>::ElementIterator
    AbstractMeshReader<ELEMENT_DIM, SPACE_DIM>::GetElementIteratorBegin(const std::set<unsigned>& rIndices)
{
    return ElementIterator(rIndices, this);
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
typename AbstractMeshReader<ELEMENT_DIM, SPACE_DIM>::ElementIterator
    AbstractMeshReader<ELEMENT_DIM, SPACE_DIM>::GetElementIteratorEnd()
{
    return ElementIterator(GetNumElements(), this);
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
AbstractMeshReader<ELEMENT_DIM, SPACE_DIM>::ElementIterator::ElementIterator(const std::set<unsigned>& rIndices,
                                                                             AbstractMeshReader<ELEMENT_DIM, SPACE_DIM>* pReader)
    : mpIndices(&rIndices),
      mpReader(pReader)
{
    if (mpIndices->empty())
    {
        mIndex = mpReader->GetNumElements();
    }
    else
    {
        mIndicesIterator = mpIndices->begin();
        mIndex = 0;
        CacheData(*mIndicesIterator, true);
    }
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void AbstractMeshReader<ELEMENT_DIM, SPACE_DIM>::ElementIterator::increment()
{
    unsigned next_index;
    if (mpIndices)
    {
        // Iterating over a subset
        ++mIndicesIterator;
        if (mIndicesIterator != mpIndices->end())
        {
            next_index = *mIndicesIterator;
        }
        else
        {
            // The subset is complete so skip to the end of the items so that we can be
            // compared to GetElementIteratorEnd
            next_index = mpReader->GetNumElements();
        }
    }
    else
    {
        // Iterating over all items
        next_index = mIndex + 1;
    }
    CacheData(next_index);
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void AbstractMeshReader<ELEMENT_DIM, SPACE_DIM>::ElementIterator::CacheData(unsigned index, bool firstRead)
{
    assert(mpReader);
    assert(mIndex < index || mIndex == 0u || index == mpReader->GetNumElements());
    if (index < mpReader->GetNumElements())
    {
        if (mpReader->IsFileFormatBinary())
        {
            mLastDataRead = mpReader->GetElementData(index);
        }
        else
        {
            if (firstRead)
            {
                assert(mIndex == 0u);
                //ASCII at construction - do an initial read to make sure the line mIndex is read
                mLastDataRead = mpReader->GetNextElementData();
            }
            //ASCII generic case, where we might need to skip some unread items
            while (mIndex < index)
            {
                mLastDataRead = mpReader->GetNextElementData();
                mIndex++;
            }
        }
    }
    mIndex = index;
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
typename AbstractMeshReader<ELEMENT_DIM, SPACE_DIM>::NodeIterator
    AbstractMeshReader<ELEMENT_DIM, SPACE_DIM>::GetNodeIteratorBegin()
{
    return NodeIterator(0u, this);
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
typename AbstractMeshReader<ELEMENT_DIM, SPACE_DIM>::NodeIterator
    AbstractMeshReader<ELEMENT_DIM, SPACE_DIM>::GetNodeIteratorBegin(const std::set<unsigned>& rIndices)
{
    return NodeIterator(rIndices, this);
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
typename AbstractMeshReader<ELEMENT_DIM, SPACE_DIM>::NodeIterator
    AbstractMeshReader<ELEMENT_DIM, SPACE_DIM>::GetNodeIteratorEnd()
{
    return NodeIterator(GetNumNodes(), this);
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
AbstractMeshReader<ELEMENT_DIM, SPACE_DIM>::NodeIterator::NodeIterator(const std::set<unsigned>& rIndices,
                                                                             AbstractMeshReader<ELEMENT_DIM, SPACE_DIM>* pReader)
    : mpIndices(&rIndices),
      mpReader(pReader)
{
    if (mpIndices->empty())
    {
        mIndex = mpReader->GetNumNodes();
    }
    else
    {
        mIndicesIterator = mpIndices->begin();
        mIndex = 0;
        CacheData(*mIndicesIterator, true);
    }
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void AbstractMeshReader<ELEMENT_DIM, SPACE_DIM>::NodeIterator::increment()
{
    unsigned next_index;
    if (mpIndices)
    {
        // Iterating over a subset
        ++mIndicesIterator;
        if (mIndicesIterator != mpIndices->end())
        {
            next_index = *mIndicesIterator;
        }
        else
        {
            // The subset is complete so skip to the end of the items so that we can be
            // compared to GetNodeIteratorEnd
            next_index = mpReader->GetNumNodes();
        }
    }
    else
    {
        // Iterating over all items
        next_index = mIndex + 1;
    }
    CacheData(next_index);
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void AbstractMeshReader<ELEMENT_DIM, SPACE_DIM>::NodeIterator::CacheData(unsigned index, bool firstRead)
{
    assert(mpReader);
    assert(mIndex < index || mIndex == 0u || index == mpReader->GetNumNodes());
    if (index < mpReader->GetNumNodes())
    {
        if (mpReader->IsFileFormatBinary())
        {
            mLastDataRead = mpReader->GetNode(index);
        }
        else
        {
            if (firstRead)
            {
                assert(mIndex == 0u);
                //ASCII at construction - do an initial read to make sure the line mIndex is read
                mLastDataRead = mpReader->GetNextNode();
            }
            //ASCII generic case, where we might need to skip some unread items
            while (mIndex < index)
            {
                mLastDataRead = mpReader->GetNextNode();
                mIndex++;
            }
        }
    }
    mIndex = index;
}

// Explicit instantiation
template class AbstractMeshReader<0,1>;
template class AbstractMeshReader<1,1>;
template class AbstractMeshReader<1,2>;
template class AbstractMeshReader<1,3>;
template class AbstractMeshReader<2,2>;
template class AbstractMeshReader<2,3>;
template class AbstractMeshReader<3,3>;