CellAppliedForceWriter.cpp

/*

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*/

#include "CellAppliedForceWriter.hpp"
#include "NodeBasedCellPopulation.hpp"
#include "UblasVectorInclude.hpp"

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
CellAppliedForceWriter<ELEMENT_DIM, SPACE_DIM>::CellAppliedForceWriter()
    : AbstractCellWriter<ELEMENT_DIM, SPACE_DIM>("cellappliedforce.dat")
{
    this->mVtkVectorCellDataName = "Cell applied force";
    this->mOutputScalarData = false;
    this->mOutputVectorData = true;
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
c_vector<double, SPACE_DIM> CellAppliedForceWriter<ELEMENT_DIM, SPACE_DIM>::GetVectorCellDataForVtkOutput(CellPtr pCell, AbstractCellPopulation<ELEMENT_DIM, SPACE_DIM>* pCellPopulation)
{
    c_vector<double, SPACE_DIM> applied_force = scalar_vector<double>(SPACE_DIM, DOUBLE_UNSET);

    if (dynamic_cast<NodeBasedCellPopulation<SPACE_DIM>*>(pCellPopulation))
    {
        unsigned node_index = pCellPopulation->GetLocationIndexUsingCell(pCell);
        applied_force = pCellPopulation->GetNode(node_index)->rGetAppliedForce();
    }

    return applied_force;
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void CellAppliedForceWriter<ELEMENT_DIM, SPACE_DIM>::VisitCell(CellPtr pCell, AbstractCellPopulation<ELEMENT_DIM, SPACE_DIM>* pCellPopulation)
{
    unsigned location_index = pCellPopulation->GetLocationIndexUsingCell(pCell);
    unsigned cell_id = pCell->GetCellId();
    c_vector<double, SPACE_DIM> cell_location = pCellPopulation->GetLocationOfCellCentre(pCell);
    c_vector<double, SPACE_DIM> applied_force = GetVectorCellDataForVtkOutput(pCell, pCellPopulation);

    *this->mpOutStream << location_index << " " << cell_id << " ";
    for (unsigned i=0; i<SPACE_DIM; i++)
    {
        *this->mpOutStream << cell_location[i] << " ";
    }
    for (unsigned i=0; i<SPACE_DIM; i++)
    {
        *this->mpOutStream << applied_force[i] << " ";
    }
}

// Explicit instantiation
template class CellAppliedForceWriter<1,1>;
template class CellAppliedForceWriter<1,2>;
template class CellAppliedForceWriter<2,2>;
template class CellAppliedForceWriter<1,3>;
template class CellAppliedForceWriter<2,3>;
template class CellAppliedForceWriter<3,3>;

#include "SerializationExportWrapperForCpp.hpp"
// Declare identifier for the serializer
EXPORT_TEMPLATE_CLASS_ALL_DIMS(CellAppliedForceWriter)