CellProliferativePhasesWriter.cpp

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#include "CellProliferativePhasesWriter.hpp"
#include "AbstractCellPopulation.hpp"
#include "AbstractPhaseBasedCellCycleModel.hpp"

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
CellProliferativePhasesWriter<ELEMENT_DIM, SPACE_DIM>::CellProliferativePhasesWriter()
    : AbstractCellWriter<ELEMENT_DIM, SPACE_DIM>("results.vizcellphases")
{
    this->mVtkCellDataName = "Cycle phases";
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
double CellProliferativePhasesWriter<ELEMENT_DIM, SPACE_DIM>::GetCellDataForVtkOutput(CellPtr pCell, AbstractCellPopulation<ELEMENT_DIM, SPACE_DIM>* pCellPopulation)
{
    double phase = static_cast<AbstractPhaseBasedCellCycleModel*>(pCell->GetCellCycleModel())->GetCurrentCellCyclePhase();
    return phase;
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void CellProliferativePhasesWriter<ELEMENT_DIM, SPACE_DIM>::VisitCell(CellPtr pCell, AbstractCellPopulation<ELEMENT_DIM, SPACE_DIM>* pCellPopulation)
{
    double phase = static_cast<AbstractPhaseBasedCellCycleModel*>(pCell->GetCellCycleModel())->GetCurrentCellCyclePhase();
    *this->mpOutStream << phase << " ";
}

// Explicit instantiation
template class CellProliferativePhasesWriter<1,1>;
template class CellProliferativePhasesWriter<1,2>;
template class CellProliferativePhasesWriter<2,2>;
template class CellProliferativePhasesWriter<1,3>;
template class CellProliferativePhasesWriter<2,3>;
template class CellProliferativePhasesWriter<3,3>;

#include "SerializationExportWrapperForCpp.hpp"
// Declare identifier for the serializer
EXPORT_TEMPLATE_CLASS_ALL_DIMS(CellProliferativePhasesWriter)