CellProliferativeTypesWriter.cpp

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*/

#include "CellProliferativeTypesWriter.hpp"

#include "AbstractCellPopulation.hpp"
#include "ApoptoticCellProperty.hpp"
#include "CellLabel.hpp"
#include "WildTypeCellMutationState.hpp"

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
CellProliferativeTypesWriter<ELEMENT_DIM, SPACE_DIM>::CellProliferativeTypesWriter()
    : AbstractCellWriter<ELEMENT_DIM, SPACE_DIM>("results.vizcelltypes")
{
    this->mVtkCellDataName = "Cell types";
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
double CellProliferativeTypesWriter<ELEMENT_DIM, SPACE_DIM>::GetCellDataForVtkOutput(CellPtr pCell, AbstractCellPopulation<ELEMENT_DIM, SPACE_DIM>* pCellPopulation)
{
    double colour = pCell->GetCellProliferativeType()->GetColour();

    // Set colour dependent on cell mutation state
    if (!pCell->GetMutationState()->IsType<WildTypeCellMutationState>())
    {
        colour = pCell->GetMutationState()->GetColour();
    }
    if (pCell->HasCellProperty<CellLabel>())
    {
        CellPropertyCollection collection = pCell->rGetCellPropertyCollection().GetProperties<CellLabel>();
        boost::shared_ptr<CellLabel> p_label = boost::static_pointer_cast<CellLabel>(collection.GetProperty());
        colour = p_label->GetColour();
    }
    if (pCell->HasCellProperty<ApoptoticCellProperty>() || pCell->HasApoptosisBegun())
    {
        colour = 6.0;
    }

    return colour;
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void CellProliferativeTypesWriter<ELEMENT_DIM, SPACE_DIM>::VisitCell(CellPtr pCell, AbstractCellPopulation<ELEMENT_DIM, SPACE_DIM>* pCellPopulation)
{
    unsigned colour = pCell->GetCellProliferativeType()->GetColour();

    // Set colour dependent on cell mutation state
    if (!pCell->GetMutationState()->IsType<WildTypeCellMutationState>())
    {
        colour = pCell->GetMutationState()->GetColour();
    }
    if (pCell->HasCellProperty<CellLabel>())
    {
        CellPropertyCollection collection = pCell->rGetCellPropertyCollection().GetProperties<CellLabel>();
        boost::shared_ptr<CellLabel> p_label = boost::static_pointer_cast<CellLabel>(collection.GetProperty());
        colour = p_label->GetColour();
    }
    if (pCell->HasCellProperty<ApoptoticCellProperty>() || pCell->HasApoptosisBegun())
    {
        colour = 6;
    }

    *this->mpOutStream << colour << " ";
}

// Explicit instantiation
template class CellProliferativeTypesWriter<1,1>;
template class CellProliferativeTypesWriter<1,2>;
template class CellProliferativeTypesWriter<2,2>;
template class CellProliferativeTypesWriter<1,3>;
template class CellProliferativeTypesWriter<2,3>;
template class CellProliferativeTypesWriter<3,3>;

#include "SerializationExportWrapperForCpp.hpp"
// Declare identifier for the serializer
EXPORT_TEMPLATE_CLASS_ALL_DIMS(CellProliferativeTypesWriter)