DeltaNotchSrnModel.hpp

/*

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*/

#ifndef DELTANOTCHSRNMODEL_HPP_
#define DELTANOTCHSRNMODEL_HPP_

#include "ChasteSerialization.hpp"
#include <boost/serialization/base_object.hpp>

#include "DeltaNotchOdeSystem.hpp"
#include "AbstractOdeSrnModel.hpp"

class DeltaNotchSrnModel : public AbstractOdeSrnModel
{
private:

    friend class boost::serialization::access;
    template<class Archive>
    void serialize(Archive & archive, const unsigned int version)
    {
        archive & boost::serialization::base_object<AbstractOdeSrnModel>(*this);
    }

protected:
    DeltaNotchSrnModel(const DeltaNotchSrnModel& rModel);

public:

    DeltaNotchSrnModel(boost::shared_ptr<AbstractCellCycleModelOdeSolver> pOdeSolver = boost::shared_ptr<AbstractCellCycleModelOdeSolver>());

    AbstractSrnModel* CreateSrnModel();

    void Initialise(); // override

    void SimulateToCurrentTime();

    void UpdateDeltaNotch();

    double GetNotch();

    double GetDelta();

    double GetMeanNeighbouringDelta();

    void OutputSrnModelParameters(out_stream& rParamsFile);
};

// Declare identifier for the serializer
#include "SerializationExportWrapper.hpp"
CHASTE_CLASS_EXPORT(DeltaNotchSrnModel)
#include "CellCycleModelOdeSolverExportWrapper.hpp"
EXPORT_CELL_CYCLE_MODEL_ODE_SOLVER(DeltaNotchSrnModel)

#endif /* DELTANOTCHSRNMODEL_HPP_ */