DifferentialAdhesionPottsUpdateRule.cpp

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#include "DifferentialAdhesionPottsUpdateRule.hpp"

#include "CellLabel.hpp"

template<unsigned DIM>
DifferentialAdhesionPottsUpdateRule<DIM>::DifferentialAdhesionPottsUpdateRule()
    : AdhesionPottsUpdateRule<DIM>(),
      mLabelledCellLabelledCellAdhesionEnergyParameter(0.1), // Educated guess
      mLabelledCellCellAdhesionEnergyParameter(0.1), // Educated guess
      mLabelledCellBoundaryAdhesionEnergyParameter(0.2) // Educated guess
{
}

template<unsigned DIM>
DifferentialAdhesionPottsUpdateRule<DIM>::~DifferentialAdhesionPottsUpdateRule()
{
}

template<unsigned DIM>
double DifferentialAdhesionPottsUpdateRule<DIM>::GetCellCellAdhesionEnergy(CellPtr pCellA, CellPtr pCellB)
{
    if (pCellA->HasCellProperty<CellLabel>() && pCellB->HasCellProperty<CellLabel>())
    {
        return GetLabelledCellLabelledCellAdhesionEnergyParameter();
    }
    else if (pCellA->HasCellProperty<CellLabel>() || pCellB->HasCellProperty<CellLabel>())
    {
        return GetLabelledCellCellAdhesionEnergyParameter();
    }
    else
    {
        return this->GetCellCellAdhesionEnergyParameter();
    }
}

template<unsigned DIM>
double DifferentialAdhesionPottsUpdateRule<DIM>::GetCellBoundaryAdhesionEnergy(CellPtr pCell)
{
    if (pCell->HasCellProperty<CellLabel>())
    {
        return GetLabelledCellBoundaryAdhesionEnergyParameter();
    }
    else
    {
        return this->GetCellBoundaryAdhesionEnergyParameter();
    }
}

template<unsigned DIM>
double DifferentialAdhesionPottsUpdateRule<DIM>::GetLabelledCellLabelledCellAdhesionEnergyParameter()
{
    return mLabelledCellLabelledCellAdhesionEnergyParameter;
}

template<unsigned DIM>
double DifferentialAdhesionPottsUpdateRule<DIM>::GetLabelledCellCellAdhesionEnergyParameter()
{
    return mLabelledCellCellAdhesionEnergyParameter;
}

template<unsigned DIM>
double DifferentialAdhesionPottsUpdateRule<DIM>::GetLabelledCellBoundaryAdhesionEnergyParameter()
{
    return mLabelledCellBoundaryAdhesionEnergyParameter;
}

template<unsigned DIM>
void DifferentialAdhesionPottsUpdateRule<DIM>::SetLabelledCellLabelledCellAdhesionEnergyParameter(double labelledCellLabelledCellAdhesionEnergyParameter)
{
    mLabelledCellLabelledCellAdhesionEnergyParameter = labelledCellLabelledCellAdhesionEnergyParameter;
}

template<unsigned DIM>
void DifferentialAdhesionPottsUpdateRule<DIM>::SetLabelledCellCellAdhesionEnergyParameter(double labelledCellCellAdhesionEnergyParameter)
{
    mLabelledCellCellAdhesionEnergyParameter = labelledCellCellAdhesionEnergyParameter;
}

template<unsigned DIM>
void DifferentialAdhesionPottsUpdateRule<DIM>::SetLabelledCellBoundaryAdhesionEnergyParameter(double labelledCellBoundaryAdhesionEnergyParameter)
{
    mLabelledCellBoundaryAdhesionEnergyParameter = labelledCellBoundaryAdhesionEnergyParameter;
}

template<unsigned DIM>
void DifferentialAdhesionPottsUpdateRule<DIM>::OutputUpdateRuleParameters(out_stream& rParamsFile)
{
    *rParamsFile << "\t\t\t<LabelledCellLabelledCellAdhesionEnergyParameter>" << mLabelledCellLabelledCellAdhesionEnergyParameter << "</LabelledCellLabelledCellAdhesionEnergyParameter>\n";
    *rParamsFile << "\t\t\t<LabelledCellCellAdhesionEnergyParameter>" << mLabelledCellCellAdhesionEnergyParameter << "</LabelledCellCellAdhesionEnergyParameter>\n";
    *rParamsFile << "\t\t\t<LabelledCellBoundaryAdhesionEnergyParameter>" << mLabelledCellBoundaryAdhesionEnergyParameter << "</LabelledCellBoundaryAdhesionEnergyParameter>\n";

    // Call method on direct parent class
    AdhesionPottsUpdateRule<DIM>::OutputUpdateRuleParameters(rParamsFile);
}

// Explicit instantiation
template class DifferentialAdhesionPottsUpdateRule<1>;
template class DifferentialAdhesionPottsUpdateRule<2>;
template class DifferentialAdhesionPottsUpdateRule<3>;

// Serialization for Boost >= 1.36
#include "SerializationExportWrapperForCpp.hpp"
EXPORT_TEMPLATE_CLASS_SAME_DIMS(DifferentialAdhesionPottsUpdateRule)