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VertexT3SwapLocationsWriter.cpp
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/*
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Copyright (c) 2005-2018, University of Oxford.
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All rights reserved.
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University of Oxford means the Chancellor, Masters and Scholars of the
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University of Oxford, having an administrative office at Wellington
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Square, Oxford OX1 2JD, UK.
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This file is part of Chaste.
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Redistribution and use in source and binary forms, with or without
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modification, are permitted provided that the following conditions are met:
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* Redistributions of source code must retain the above copyright notice,
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this list of conditions and the following disclaimer.
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* Redistributions in binary form must reproduce the above copyright notice,
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this list of conditions and the following disclaimer in the documentation
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and/or other materials provided with the distribution.
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* Neither the name of the University of Oxford nor the names of its
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contributors may be used to endorse or promote products derived from this
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software without specific prior written permission.
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THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
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ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
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LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
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CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE
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GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
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HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
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LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
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OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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*/
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#include "VertexT3SwapLocationsWriter.hpp"
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#include "AbstractCellPopulation.hpp"
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#include "MeshBasedCellPopulation.hpp"
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#include "CaBasedCellPopulation.hpp"
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#include "NodeBasedCellPopulation.hpp"
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#include "PottsBasedCellPopulation.hpp"
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#include "VertexBasedCellPopulation.hpp"
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template
<
unsigned
ELEMENT_DIM,
unsigned
SPACE_DIM>
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VertexT3SwapLocationsWriter<ELEMENT_DIM, SPACE_DIM>::VertexT3SwapLocationsWriter
()
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:
AbstractCellPopulationWriter
<ELEMENT_DIM, SPACE_DIM>(
"T3SwapLocations.dat"
)
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{
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}
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template
<
unsigned
ELEMENT_DIM,
unsigned
SPACE_DIM>
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void
VertexT3SwapLocationsWriter<ELEMENT_DIM, SPACE_DIM>::Visit
(
MeshBasedCellPopulation<ELEMENT_DIM, SPACE_DIM>
* pCellPopulation)
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{
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}
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template
<
unsigned
ELEMENT_DIM,
unsigned
SPACE_DIM>
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void
VertexT3SwapLocationsWriter<ELEMENT_DIM, SPACE_DIM>::Visit
(
CaBasedCellPopulation<SPACE_DIM>
* pCellPopulation)
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{
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}
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template
<
unsigned
ELEMENT_DIM,
unsigned
SPACE_DIM>
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void
VertexT3SwapLocationsWriter<ELEMENT_DIM, SPACE_DIM>::Visit
(
NodeBasedCellPopulation<SPACE_DIM>
* pCellPopulation)
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{
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}
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template
<
unsigned
ELEMENT_DIM,
unsigned
SPACE_DIM>
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void
VertexT3SwapLocationsWriter<ELEMENT_DIM, SPACE_DIM>::Visit
(
PottsBasedCellPopulation<SPACE_DIM>
* pCellPopulation)
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{
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}
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template
<
unsigned
ELEMENT_DIM,
unsigned
SPACE_DIM>
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void
VertexT3SwapLocationsWriter<ELEMENT_DIM, SPACE_DIM>::Visit
(
VertexBasedCellPopulation<SPACE_DIM>
* pCellPopulation)
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{
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std::vector< c_vector<double, SPACE_DIM> > t3_swap_locations = pCellPopulation->
rGetMesh
().
GetLocationsOfT3Swaps
();
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*this->mpOutStream << t3_swap_locations.size() <<
"\t"
;
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for
(
unsigned
index = 0; index < t3_swap_locations.size(); index++)
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{
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for
(
unsigned
i=0; i<SPACE_DIM; i++)
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{
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*this->mpOutStream << t3_swap_locations[index][i] <<
"\t"
;
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}
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}
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pCellPopulation->
rGetMesh
().
ClearLocationsOfT3Swaps
();
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}
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// Explicit instantiation
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template
class
VertexT3SwapLocationsWriter<1,1>
;
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template
class
VertexT3SwapLocationsWriter<1,2>
;
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template
class
VertexT3SwapLocationsWriter<2,2>
;
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template
class
VertexT3SwapLocationsWriter<1,3>
;
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template
class
VertexT3SwapLocationsWriter<2,3>
;
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template
class
VertexT3SwapLocationsWriter<3,3>
;
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#include "
SerializationExportWrapperForCpp.hpp
"
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// Declare identifier for the serializer
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EXPORT_TEMPLATE_CLASS_ALL_DIMS
(
VertexT3SwapLocationsWriter
)
VertexT3SwapLocationsWriter
Definition:
VertexT3SwapLocationsWriter.hpp:49
MutableVertexMesh::GetLocationsOfT3Swaps
std::vector< c_vector< double, SPACE_DIM > > GetLocationsOfT3Swaps()
Definition:
MutableVertexMesh.cpp:310
CaBasedCellPopulation
Definition:
CaBasedCellPopulation.hpp:64
VertexT3SwapLocationsWriter::VertexT3SwapLocationsWriter
VertexT3SwapLocationsWriter()
Definition:
VertexT3SwapLocationsWriter.cpp:45
MeshBasedCellPopulation
Definition:
MeshBasedCellPopulation.hpp:57
VertexBasedCellPopulation
Definition:
FixedVertexBasedDivisionRule.hpp:47
VertexBasedCellPopulation::rGetMesh
MutableVertexMesh< DIM, DIM > & rGetMesh()
Definition:
VertexBasedCellPopulation.cpp:135
MutableVertexMesh::ClearLocationsOfT3Swaps
void ClearLocationsOfT3Swaps()
Definition:
MutableVertexMesh.cpp:322
EXPORT_TEMPLATE_CLASS_ALL_DIMS
#define EXPORT_TEMPLATE_CLASS_ALL_DIMS(CLASS)
Definition:
SerializationExportWrapper.hpp:358
PottsBasedCellPopulation
Definition:
PottsBasedCellPopulation.hpp:60
AbstractCellPopulationWriter
Definition:
AbstractCellPopulationWriter.hpp:60
VertexT3SwapLocationsWriter::Visit
virtual void Visit(MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation)
Definition:
VertexT3SwapLocationsWriter.cpp:51
NodeBasedCellPopulation
Definition:
NodeBasedCellPopulation.hpp:52
SerializationExportWrapperForCpp.hpp
cell_based
src
writers
population_writers
VertexT3SwapLocationsWriter.cpp
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