#include <AbstractGrowingDomainPdeModifier.hpp>

Inheritance diagram for AbstractGrowingDomainPdeModifier< DIM >:

Collaboration diagram for AbstractGrowingDomainPdeModifier< DIM >:

Public Member Functions
	AbstractGrowingDomainPdeModifier (boost::shared_ptr< AbstractLinearPde< DIM, DIM > > pPde=boost::shared_ptr< AbstractLinearPde< DIM, DIM > >(), boost::shared_ptr< AbstractBoundaryCondition< DIM > > pBoundaryCondition=boost::shared_ptr< AbstractBoundaryCondition< DIM > >(), bool isNeumannBoundaryCondition=true, Vec solution=nullptr)

virtual	~AbstractGrowingDomainPdeModifier ()

void	GenerateFeMesh (AbstractCellPopulation< DIM, DIM > &rCellPopulation)

void	UpdateCellData (AbstractCellPopulation< DIM, DIM > &rCellPopulation)

void	OutputSimulationModifierParameters (out_stream &rParamsFile)

Public Member Functions inherited from AbstractPdeModifier< DIM >
	AbstractPdeModifier (boost::shared_ptr< AbstractLinearPde< DIM, DIM > > pPde=NULL, boost::shared_ptr< AbstractBoundaryCondition< DIM > > pBoundaryCondition=boost::shared_ptr< AbstractBoundaryCondition< DIM > >(), bool isNeumannBoundaryCondition=true, Vec solution=nullptr)

virtual	~AbstractPdeModifier ()

boost::shared_ptr < AbstractLinearPde< DIM, DIM > >	GetPde ()

boost::shared_ptr < AbstractBoundaryCondition < DIM > >	GetBoundaryCondition ()

bool	IsNeumannBoundaryCondition ()

void	SetDependentVariableName (const std::string &rName)

std::string &	rGetDependentVariableName ()

bool	HasAveragedSourcePde ()

void	SetUpSourceTermsForAveragedSourcePde (TetrahedralMesh< DIM, DIM > pMesh, std::map< CellPtr, unsigned > pCellPdeElementMap=nullptr)

Vec	GetSolution ()

Vec	GetSolution () const

TetrahedralMesh< DIM, DIM > *	GetFeMesh () const

virtual void	SetupSolve (AbstractCellPopulation< DIM, DIM > &rCellPopulation, std::string outputDirectory)

virtual void	UpdateAtEndOfTimeStep (AbstractCellPopulation< DIM, DIM > &rCellPopulation)=0

virtual void	UpdateAtEndOfOutputTimeStep (AbstractCellPopulation< DIM, DIM > &rCellPopulation)

virtual void	UpdateAtEndOfSolve (AbstractCellPopulation< DIM, DIM > &rCellPopulation)

bool	GetOutputGradient ()

void	SetOutputGradient (bool outputGradient)

void	SetOutputSolutionAtPdeNodes (bool outputSolutionAtPdeNodes)

void	OutputSimulationModifierParameters (out_stream &rParamsFile)

Public Member Functions inherited from AbstractCellBasedSimulationModifier< DIM, DIM >
	AbstractCellBasedSimulationModifier ()

virtual	~AbstractCellBasedSimulationModifier ()

virtual void	UpdateAtEndOfTimeStep (AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > &rCellPopulation)=0

virtual void	UpdateAtEndOfOutputTimeStep (AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > &rCellPopulation)

virtual void	SetupSolve (AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > &rCellPopulation, std::string outputDirectory)=0

virtual void	UpdateAtEndOfSolve (AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > &rCellPopulation)

void	OutputSimulationModifierInfo (out_stream &rParamsFile)

Public Member Functions inherited from Identifiable
virtual	~Identifiable ()

std::string	GetIdentifier () const

Private Member Functions
template<class Archive >
void	serialize (Archive &archive, const unsigned int version)

Friends
class	TestEllipticGrowingDomainPdeModifier

class	TestParabolicGrowingDomainPdeModifier

class	boost::serialization::access

Additional Inherited Members
Protected Attributes inherited from AbstractPdeModifier< DIM >
boost::shared_ptr < AbstractLinearPde< DIM, DIM > >	mpPde

boost::shared_ptr < AbstractBoundaryCondition < DIM > >	mpBoundaryCondition

bool	mIsNeumannBoundaryCondition

std::string	mDependentVariableName

Vec	mSolution

TetrahedralMesh< DIM, DIM > *	mpFeMesh

std::string	mOutputDirectory

bool	mOutputGradient

bool	mOutputSolutionAtPdeNodes

out_stream	mpVizPdeSolutionResultsFile

bool	mDeleteFeMesh

Detailed Description

template<unsigned DIM>
class AbstractGrowingDomainPdeModifier< DIM >

An abstract modifier class containing functionality common to EllipticGrowingDomainPdeModifier and ParabolicGrowingDomainPdeModifier, which both solve a linear elliptic or parabolic PDE coupled to a cell-based simulation on an evolving domain defined by the cell population.

Definition at line 50 of file AbstractGrowingDomainPdeModifier.hpp.

Constructor & Destructor Documentation

template<unsigned DIM>

AbstractGrowingDomainPdeModifier< DIM >::AbstractGrowingDomainPdeModifier	(	boost::shared_ptr< AbstractLinearPde< DIM, DIM > >	pPde = `boost::shared_ptr<AbstractLinearPde<DIM,DIM> >()`,
		boost::shared_ptr< AbstractBoundaryCondition< DIM > >	pBoundaryCondition = `boost::shared_ptr<AbstractBoundaryCondition<DIM> >()`,
		bool	isNeumannBoundaryCondition = `true`,
		Vec	solution = `nullptr`
	)

Constructor.

Parameters

pPde	A shared pointer to a linear PDE object (defaults to NULL)
pBoundaryCondition	A shared pointer to an abstract boundary condition (defaults to NULL, corresponding to a constant boundary condition with value zero)
isNeumannBoundaryCondition	Whether the boundary condition is Neumann (defaults to true)
solution	solution vector (defaults to NULL)

Definition at line 45 of file AbstractGrowingDomainPdeModifier.cpp.

template<unsigned DIM>

AbstractGrowingDomainPdeModifier< DIM >::~AbstractGrowingDomainPdeModifier ( )

virtual

Destructor.

Definition at line 57 of file AbstractGrowingDomainPdeModifier.cpp.