#include <AbstractHdf5Converter.hpp>
Inheritance diagram for AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >: Collaboration diagram for AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >:Public Member Functions | |
| AbstractHdf5Converter (const FileFinder &rInputDirectory, const std::string &rFileBaseName, AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh, const std::string &rSubdirectoryName, unsigned precision) | |
| void | WriteInfoFile () |
| ~AbstractHdf5Converter () | |
| std::string | GetSubdirectory () |
Protected Member Functions | |
| bool | MoveOntoNextDataset () |
Protected Attributes | |
| const FileFinder & | mrH5Folder |
| boost::shared_ptr< Hdf5DataReader > | mpReader |
| unsigned | mNumVariables |
| std::string | mFileBaseName |
| std::vector< std::string > | mDatasetNames |
| unsigned | mOpenDatasetIndex |
| AbstractTetrahedralMesh < ELEMENT_DIM, SPACE_DIM > * | mpMesh |
| OutputFileHandler * | mpOutputFileHandler |
| std::string | mRelativeSubdirectory |
| unsigned | mPrecision |
Private Member Functions | |
| void | GenerateListOfDatasets (const FileFinder &rH5Folder, const std::string &rFileName) |
Detailed Description
template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
class AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >
The derived children of this class convert output from Hdf5 format to a range of other formats for postprocessing.
Definition at line 50 of file AbstractHdf5Converter.hpp.
Constructor & Destructor Documentation
| AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::AbstractHdf5Converter | ( | const FileFinder & | rInputDirectory, |
| const std::string & | rFileBaseName, | ||
| AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > * | pMesh, | ||
| const std::string & | rSubdirectoryName, | ||
| unsigned | precision | ||
| ) |
Constructor, which does the conversion and writes the .info file.
- Note
- This method is collective, and must be called by all processes.
- Parameters
-
rInputDirectory The input directory, where the .h5 file to post-process is. rFileBaseName The base name of the data file. pMesh Pointer to the mesh. rSubdirectoryName Name for the output directory to be created (relative to inputDirectory). precision The number of digits to use in numerical output to file.
Definition at line 50 of file AbstractHdf5Converter.cpp.
References AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::GenerateListOfDatasets(), AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::mFileBaseName, AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::MoveOntoNextDataset(), AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::mpOutputFileHandler, AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::mRelativeSubdirectory, and AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::mrH5Folder.
| AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::~AbstractHdf5Converter | ( | ) |
Destructor.
Definition at line 109 of file AbstractHdf5Converter.cpp.
Member Function Documentation
|
private |
Have a look in the HDF5 file and generate a list of the datasets that it contains.
- Parameters
-
rH5Folder The directory the h5 file is in. rFileName The name of the h5 file.
Definition at line 157 of file AbstractHdf5Converter.cpp.
References FileFinder::GetAbsolutePath().
Referenced by AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::AbstractHdf5Converter().
| std::string AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::GetSubdirectory | ( | ) |
- Returns
- the relative path of the sub-directory in which the converted output is stored.
Definition at line 115 of file AbstractHdf5Converter.cpp.
Referenced by AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::CloseFilesAndPostProcess().
|
protected |
Close the existing dataset and open a new one.
This method deletes the existing mpDataReader, and opens a new one for the new dataset.
- Returns
- whether a new dataset is open, false if we have run out of them.
Definition at line 121 of file AbstractHdf5Converter.cpp.
References EXCEPTION, and UNSIGNED_UNSET.
Referenced by AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::AbstractHdf5Converter(), Hdf5ToCmguiConverter< ELEMENT_DIM, SPACE_DIM >::Hdf5ToCmguiConverter(), Hdf5ToMeshalyzerConverter< ELEMENT_DIM, SPACE_DIM >::Hdf5ToMeshalyzerConverter(), and Hdf5ToVtkConverter< ELEMENT_DIM, SPACE_DIM >::Hdf5ToVtkConverter().
| void AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::WriteInfoFile | ( | ) |
Wrtie the unlimited dimension information to file.
Definition at line 72 of file AbstractHdf5Converter.cpp.
References PetscTools::AmMaster(), DOUBLE_UNSET, and ChasteBuildInfo::GetProvenanceString().
Member Data Documentation
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protected |
The datasets that we are working with.
'Data' is a special case and handled slightly differently as all variables use the same 'time'.
Definition at line 81 of file AbstractHdf5Converter.hpp.
Referenced by Hdf5ToCmguiConverter< ELEMENT_DIM, SPACE_DIM >::Hdf5ToCmguiConverter().
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protected |
Base name for the files: [basename].vtu, [basename].dat etc.
Definition at line 73 of file AbstractHdf5Converter.hpp.
Referenced by AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::AbstractHdf5Converter().
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protected |
Number of variables to output. Read from the reader.
Definition at line 70 of file AbstractHdf5Converter.hpp.
Referenced by Hdf5ToTxtConverter< ELEMENT_DIM, SPACE_DIM >::Hdf5ToTxtConverter(), and Hdf5ToVtkConverter< ELEMENT_DIM, SPACE_DIM >::Hdf5ToVtkConverter().
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protected |
The index of the dataset that is currently open.
Definition at line 86 of file AbstractHdf5Converter.hpp.
Referenced by Hdf5ToCmguiConverter< ELEMENT_DIM, SPACE_DIM >::Hdf5ToCmguiConverter().
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protected |
Pointer to a mesh.
Definition at line 89 of file AbstractHdf5Converter.hpp.
Referenced by Hdf5ToCmguiConverter< ELEMENT_DIM, SPACE_DIM >::Hdf5ToCmguiConverter(), Hdf5ToMeshalyzerConverter< ELEMENT_DIM, SPACE_DIM >::Hdf5ToMeshalyzerConverter(), and Hdf5ToVtkConverter< ELEMENT_DIM, SPACE_DIM >::Hdf5ToVtkConverter().
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protected |
Initialised as the directory in which to store the results.
Definition at line 92 of file AbstractHdf5Converter.hpp.
Referenced by AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::AbstractHdf5Converter().
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protected |
Pointer to reader of the dataset to be converted.
Definition at line 67 of file AbstractHdf5Converter.hpp.
Referenced by Hdf5ToCmguiConverter< ELEMENT_DIM, SPACE_DIM >::Hdf5ToCmguiConverter(), Hdf5ToMeshalyzerConverter< ELEMENT_DIM, SPACE_DIM >::Hdf5ToMeshalyzerConverter(), Hdf5ToTxtConverter< ELEMENT_DIM, SPACE_DIM >::Hdf5ToTxtConverter(), Hdf5ToVtkConverter< ELEMENT_DIM, SPACE_DIM >::Hdf5ToVtkConverter(), and Hdf5ToXdmfConverter< ELEMENT_DIM, SPACE_DIM >::Hdf5ToXdmfConverter().
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The precision with which to write files: that is, the number of digits to use in numerical output.
Definition at line 104 of file AbstractHdf5Converter.hpp.
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Get the subdirectory in which the converted output is stored, relative to the input directory.
Definition at line 98 of file AbstractHdf5Converter.hpp.
Referenced by AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::AbstractHdf5Converter(), Hdf5ToMeshalyzerConverter< ELEMENT_DIM, SPACE_DIM >::Hdf5ToMeshalyzerConverter(), Hdf5ToTxtConverter< ELEMENT_DIM, SPACE_DIM >::Hdf5ToTxtConverter(), and Hdf5ToVtkConverter< ELEMENT_DIM, SPACE_DIM >::Hdf5ToVtkConverter().
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protected |
Folder that the h5 file to convert resides in
Definition at line 64 of file AbstractHdf5Converter.hpp.
Referenced by AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::AbstractHdf5Converter().
The documentation for this class was generated from the following files:
- pde/src/postprocessing/AbstractHdf5Converter.hpp
- pde/src/postprocessing/AbstractHdf5Converter.cpp
