#include <CellProliferativePhasesCountWriter.hpp>

Inheritance diagram for CellProliferativePhasesCountWriter< ELEMENT_DIM, SPACE_DIM >:

Collaboration diagram for CellProliferativePhasesCountWriter< ELEMENT_DIM, SPACE_DIM >:

Public Member Functions
	CellProliferativePhasesCountWriter ()

void	VisitAnyPopulation (AbstractCellPopulation< SPACE_DIM, SPACE_DIM > *pCellPopulation)

virtual void	Visit (MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation)

virtual void	Visit (CaBasedCellPopulation< SPACE_DIM > *pCellPopulation)

virtual void	Visit (NodeBasedCellPopulation< SPACE_DIM > *pCellPopulation)

virtual void	Visit (PottsBasedCellPopulation< SPACE_DIM > *pCellPopulation)

virtual void	Visit (VertexBasedCellPopulation< SPACE_DIM > *pCellPopulation)

Public Member Functions inherited from AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >
	AbstractCellPopulationCountWriter (const std::string &rFileName)

virtual void	WriteHeader (AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation)

Public Member Functions inherited from AbstractCellBasedWriter< ELEMENT_DIM, SPACE_DIM >
	AbstractCellBasedWriter (const std::string &rFileName)

virtual	~AbstractCellBasedWriter ()

void	CloseFile ()

virtual void	OpenOutputFile (OutputFileHandler &rOutputFileHandler)

void	OpenOutputFileForAppend (OutputFileHandler &rOutputFileHandler)

virtual void	WriteTimeStamp ()

virtual void	WriteNewline ()

void	SetFileName (std::string fileName)

std::string	GetFileName ()

Public Member Functions inherited from Identifiable
virtual	~Identifiable ()

std::string	GetIdentifier () const

Private Member Functions
template<class Archive >
void	serialize (Archive &archive, const unsigned int version)

Friends
class	boost::serialization::access

Additional Inherited Members
Protected Attributes inherited from AbstractCellBasedWriter< ELEMENT_DIM, SPACE_DIM >
std::string	mFileName

out_stream	mpOutStream

Detailed Description

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
class CellProliferativePhasesCountWriter< ELEMENT_DIM, SPACE_DIM >

A class written using the visitor pattern for writing the number of cells in each proliferative phase to file.

The output file is called cellcyclephases.dat by default.

Definition at line 49 of file CellProliferativePhasesCountWriter.hpp.

Constructor & Destructor Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

CellProliferativePhasesCountWriter< ELEMENT_DIM, SPACE_DIM >::CellProliferativePhasesCountWriter ( )

Default constructor.

Definition at line 45 of file CellProliferativePhasesCountWriter.cpp.

Member Function Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

template<class Archive >

void CellProliferativePhasesCountWriter< ELEMENT_DIM, SPACE_DIM >::serialize	(	Archive &	archive,
		const unsigned int	version
	)

inlineprivate

Serialize the object and its member variables.

Parameters

archive	the archive
version	the current version of this class

Definition at line 61 of file CellProliferativePhasesCountWriter.hpp.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void CellProliferativePhasesCountWriter< ELEMENT_DIM, SPACE_DIM >::Visit ( MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM > * pCellPopulation )

virtual

Visit the population and write the number of cells in the population that have each proliferative phase.

Outputs a line of tab-separated values of the form: [num G0 phase] [num G1 phase] [num S phase] [num G2 phase] [num M phase]

where [num G0 phase] denotes the number of cells in the population that are in G0 phase, and so on. These counts are computed through the cell population method GetCellCyclePhaseCount().

This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.

Parameters

pCellPopulation a pointer to the MeshBasedCellPopulation to visit.

Implements AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >.

Definition at line 65 of file CellProliferativePhasesCountWriter.cpp.

References PetscTools::AmMaster(), and AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetCellCyclePhaseCount().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void CellProliferativePhasesCountWriter< ELEMENT_DIM, SPACE_DIM >::Visit ( CaBasedCellPopulation< SPACE_DIM > * pCellPopulation )

virtual

Visit the population and write the number of cells in the population that have each proliferative phase.

Outputs a line of tab-separated values of the form: [num G0 phase] [num G1 phase] [num S phase] [num G2 phase] [num M phase]

where [num G0 phase] denotes the number of cells in the population that are in G0 phase, and so on. These counts are computed through the cell population method GetCellCyclePhaseCount().

This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.

Parameters

pCellPopulation a pointer to the CaBasedCellPopulation to visit.

Implements AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >.

Definition at line 79 of file CellProliferativePhasesCountWriter.cpp.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void CellProliferativePhasesCountWriter< ELEMENT_DIM, SPACE_DIM >::Visit ( NodeBasedCellPopulation< SPACE_DIM > * pCellPopulation )

virtual

Visit the population and write the number of cells in the population that have each proliferative phase.

Outputs a line of tab-separated values of the form: [num G0 phase] [num G1 phase] [num S phase] [num G2 phase] [num M phase]

where [num G0 phase] denotes the number of cells in the population that are in G0 phase, and so on. These counts are computed through the cell population method GetCellCyclePhaseCount().

This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.

Parameters

pCellPopulation a pointer to the NodeBasedCellPopulation to visit.

Implements AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >.

Definition at line 85 of file CellProliferativePhasesCountWriter.cpp.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void CellProliferativePhasesCountWriter< ELEMENT_DIM, SPACE_DIM >::Visit ( PottsBasedCellPopulation< SPACE_DIM > * pCellPopulation )

virtual

Visit the population and write the number of cells in the population that have each proliferative phase.

Outputs a line of tab-separated values of the form: [num G0 phase] [num G1 phase] [num S phase] [num G2 phase] [num M phase]

where [num G0 phase] denotes the number of cells in the population that are in G0 phase, and so on. These counts are computed through the cell population method GetCellCyclePhaseCount().

This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.

Parameters

pCellPopulation a pointer to the PottsBasedCellPopulation to visit.

Implements AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >.

Definition at line 91 of file CellProliferativePhasesCountWriter.cpp.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void CellProliferativePhasesCountWriter< ELEMENT_DIM, SPACE_DIM >::Visit ( VertexBasedCellPopulation< SPACE_DIM > * pCellPopulation )

virtual

Visit the population and write the number of cells in the population that have each proliferative phase.

Outputs a line of tab-separated values of the form: [num G0 phase] [num G1 phase] [num S phase] [num G2 phase] [num M phase]

where [num G0 phase] denotes the number of cells in the population that are in G0 phase, and so on. These counts are computed through the cell population method GetCellCyclePhaseCount().

This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.

Parameters

pCellPopulation a pointer to the VertexBasedCellPopulation to visit.

Implements AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >.

Definition at line 97 of file CellProliferativePhasesCountWriter.cpp.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void CellProliferativePhasesCountWriter< ELEMENT_DIM, SPACE_DIM >::VisitAnyPopulation ( AbstractCellPopulation< SPACE_DIM, SPACE_DIM > * pCellPopulation )

Visit the population and write the number of cells in the population that have each proliferative phase.

Outputs a line of tab-separated values of the form: [num G0 phase] [num G1 phase] [num S phase] [num G2 phase] [num M phase]

where [num G0 phase] denotes the number of cells in the population that are in G0 phase, and so on. These counts are computed through the cell population method GetCellCyclePhaseCount().

This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.

Parameters

pCellPopulation the population to write.

Definition at line 51 of file CellProliferativePhasesCountWriter.cpp.

References PetscTools::AmMaster(), and AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetCellCyclePhaseCount().

Friends And Related Function Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

friend class boost::serialization::access

friend

Needed for serialization.

Definition at line 53 of file CellProliferativePhasesCountWriter.hpp.

The documentation for this class was generated from the following files:

cell_based/src/writers/population_count_writers/CellProliferativePhasesCountWriter.hpp
cell_based/src/writers/population_count_writers/CellProliferativePhasesCountWriter.cpp

Public Member Functions

Private Member Functions

Friends

Additional Inherited Members

Detailed Description

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM> class CellProliferativePhasesCountWriter< ELEMENT_DIM, SPACE_DIM >

Constructor & Destructor Documentation

Member Function Documentation

Friends And Related Function Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
class CellProliferativePhasesCountWriter< ELEMENT_DIM, SPACE_DIM >