Chaste  Release::2018.1
Public Member Functions | Private Member Functions | Friends | List of all members
MonodomainTissue< ELEMENT_DIM, SPACE_DIM > Class Template Reference

#include <MonodomainTissue.hpp>

+ Inheritance diagram for MonodomainTissue< ELEMENT_DIM, SPACE_DIM >:
+ Collaboration diagram for MonodomainTissue< ELEMENT_DIM, SPACE_DIM >:

Public Member Functions

 MonodomainTissue (AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM > *pCellFactory, bool exchangeHalos=false)
 
 MonodomainTissue (AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh)
 
- Public Member Functions inherited from AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
 AbstractCardiacTissue (AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM > *pCellFactory, bool exchangeHalos=false)
 
 AbstractCardiacTissue (AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh)
 
virtual ~AbstractCardiacTissue ()
 
bool HasPurkinje ()
 
void SetCacheReplication (bool doCacheReplication)
 
bool GetDoCacheReplication ()
 
const c_matrix< double,
SPACE_DIM, SPACE_DIM > & 		rGetIntracellularConductivityTensor (unsigned elementIndex)
 
virtual const c_matrix< double,
SPACE_DIM, SPACE_DIM > & 		rGetExtracellularConductivityTensor (unsigned elementIndex)
 
AbstractCardiacCellInterface * GetCardiacCell (unsigned globalIndex)
 
AbstractCardiacCellInterface * GetPurkinjeCell (unsigned globalIndex)
 
AbstractCardiacCellInterface * GetCardiacCellOrHaloCell (unsigned globalIndex)
 
virtual void SolveCellSystems (Vec existingSolution, double time, double nextTime, bool updateVoltage=false)
 
ReplicatableVector & rGetIionicCacheReplicated ()
 
ReplicatableVector & rGetIntracellularStimulusCacheReplicated ()
 
ReplicatableVector & rGetPurkinjeIionicCacheReplicated ()
 
ReplicatableVector & rGetPurkinjeIntracellularStimulusCacheReplicated ()
 
void UpdateCaches (unsigned globalIndex, unsigned localIndex, double nextTime)
 
void UpdatePurkinjeCaches (unsigned globalIndex, unsigned localIndex, double nextTime)
 
void ReplicateCaches ()
 
const std::vector
< AbstractCardiacCellInterface * > & 		rGetCellsDistributed () const
 
const std::vector
< AbstractCardiacCellInterface * > & 		rGetPurkinjeCellsDistributed () const
 
const AbstractTetrahedralMesh
< ELEMENT_DIM, SPACE_DIM > * 		pGetMesh () const
 
void SetConductivityModifier (AbstractConductivityModifier< ELEMENT_DIM, SPACE_DIM > *pModifier)
 
template<class Archive >
void SaveCardiacCells (Archive &archive, const unsigned int version) const
 
template<class Archive >
void LoadCardiacCells (Archive &archive, const unsigned int version)
 

Private Member Functions

template<class Archive >
void serialize (Archive &archive, const unsigned int version)
 

Friends

class TestMonodomainTissue
 
class boost::serialization::access
 

Additional Inherited Members

- Protected Member Functions inherited from AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
void CalculateHaloNodesFromNodeExchange ()
 
void SetUpHaloCells (AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM > *pCellFactory)
 
- Protected Attributes inherited from AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
AbstractTetrahedralMesh
< ELEMENT_DIM, SPACE_DIM > * 		mpMesh
 
AbstractConductivityTensors
< ELEMENT_DIM, SPACE_DIM > * 		mpIntracellularConductivityTensors
 
std::vector
< AbstractCardiacCellInterface * > 		mCellsDistributed
 
std::vector
< AbstractCardiacCellInterface * > 		mPurkinjeCellsDistributed
 
ReplicatableVector mIionicCacheReplicated
 
ReplicatableVector mPurkinjeIionicCacheReplicated
 
ReplicatableVector mIntracellularStimulusCacheReplicated
 
ReplicatableVector mPurkinjeIntracellularStimulusCacheReplicated
 
HeartConfig * mpConfig
 
DistributedVectorFactory * mpDistributedVectorFactory
 
std::string mFibreFilePathNoExtension
 
AbstractConductivityModifier
< ELEMENT_DIM, SPACE_DIM > * 		mpConductivityModifier
 
bool mHasPurkinje
 
bool mDoCacheReplication
 
bool mMeshUnarchived
 
bool mExchangeHalos
 
std::vector< unsigned > mHaloNodes
 
std::vector
< AbstractCardiacCellInterface * > 		mHaloCellsDistributed
 
std::map< unsigned, unsigned > mHaloGlobalToLocalIndexMap
 
std::vector< std::vector
< unsigned > > 		mNodesToSendPerProcess
 
std::vector< std::vector
< unsigned > > 		mNodesToReceivePerProcess
 

Detailed Description

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM = ELEMENT_DIM>
class MonodomainTissue< ELEMENT_DIM, SPACE_DIM >

MonodomainTissue class.

Essentially identical to AbstractCardiacTissue - see documentation for AbstractCardiacTissue.

Definition at line 55 of file MonodomainTissue.hpp.

Constructor & Destructor Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
MonodomainTissue< ELEMENT_DIM, SPACE_DIM >::MonodomainTissue ( AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM > *  pCellFactory,
bool  exchangeHalos = false 
)

Constructor

Parameters
pCellFactoryProvides the mesh and cells
exchangeHalosused in state-variable interpolation. Defaults to false.

Definition at line 39 of file MonodomainTissue.cpp.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
MonodomainTissue< ELEMENT_DIM, SPACE_DIM >::MonodomainTissue ( AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *  pMesh)

Another constructor (for archiving)

Parameters
pMeshthe mesh (recovered from archive)

Definition at line 47 of file MonodomainTissue.cpp.

Member Function Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM = ELEMENT_DIM>
template<class Archive >
void MonodomainTissue< ELEMENT_DIM, SPACE_DIM >::serialize ( Archive &  archive,
const unsigned int  version 
)
inlineprivate

Archive the member variables.

Parameters
archive
version

Definition at line 69 of file MonodomainTissue.hpp.

Friends And Related Function Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM = ELEMENT_DIM>
friend class boost::serialization::access
friend

Needed for serialization.

Definition at line 61 of file MonodomainTissue.hpp.

The documentation for this class was generated from the following files: