#include <NodeAttributes.hpp>

Collaboration diagram for NodeAttributes< SPACE_DIM >:

Public Member Functions
	NodeAttributes ()

std::vector< double > &	rGetAttributes ()

void	AddAttribute (double attribute)

unsigned	GetRegion ()

void	SetRegion (unsigned region)

c_vector< double, SPACE_DIM > &	rGetAppliedForce ()

void	AddAppliedForceContribution (const c_vector< double, SPACE_DIM > &rForceContribution)

void	ClearAppliedForce ()

void	AddNeighbour (unsigned index)

void	ClearNeighbours ()

void	RemoveDuplicateNeighbours ()

bool	NeighboursIsEmpty ()

void	SetNeighboursSetUp (bool flag)

bool	GetNeighboursSetUp ()

std::vector< unsigned > &	rGetNeighbours ()

bool	IsParticle ()

void	SetIsParticle (bool isParticle)

double	GetRadius ()

void	SetRadius (double radius)

Private Member Functions
template<class Archive >
void	serialize (Archive &archive, const unsigned int version)

Private Attributes
std::vector< double >	mAttributes

unsigned	mRegion

c_vector< double, SPACE_DIM >	mAppliedForce

double	mRadius

std::vector< unsigned >	mNeighbourIndices

bool	mNeighboursSetUp

bool	mIsParticle

Friends
class	boost::serialization::access

Detailed Description

template<unsigned SPACE_DIM>
class NodeAttributes< SPACE_DIM >

A container for attributes associated with the Node class.

Definition at line 47 of file NodeAttributes.hpp.

Constructor & Destructor Documentation

template<unsigned SPACE_DIM>

NodeAttributes< SPACE_DIM >::NodeAttributes ( )

Defaults all variables.

Definition at line 42 of file NodeAttributes.cpp.

Member Function Documentation

template<unsigned SPACE_DIM>

void NodeAttributes< SPACE_DIM >::AddAppliedForceContribution ( const c_vector< double, SPACE_DIM > & rForceContribution )

Add a contribution to the force vector

Parameters

rForceContribution the contribution to add to mAppliedForce

Definition at line 84 of file NodeAttributes.cpp.

template<unsigned SPACE_DIM>

void NodeAttributes< SPACE_DIM >::AddAttribute ( double attribute )

Push an attribute back onto mAttributes

Parameters

attribute the value of the attribute.

Definition at line 60 of file NodeAttributes.cpp.

template<unsigned SPACE_DIM>

void NodeAttributes< SPACE_DIM >::AddNeighbour ( unsigned index )

Add a neighbour to this node's vector of neighbouring node indices.

Parameters

index of the node to add.

Definition at line 99 of file NodeAttributes.cpp.

template<unsigned SPACE_DIM>

void NodeAttributes< SPACE_DIM >::ClearAppliedForce ( )

Set mAppliedForce to a zero vector.

Definition at line 90 of file NodeAttributes.cpp.

template<unsigned SPACE_DIM>

void NodeAttributes< SPACE_DIM >::ClearNeighbours ( )

Clear this node's vector of neighbour indices.

Definition at line 105 of file NodeAttributes.cpp.

template<unsigned SPACE_DIM>

bool NodeAttributes< SPACE_DIM >::GetNeighboursSetUp ( )

Returns: a flag to indicate that the neighbours of this node have/have not been updated.

Definition at line 130 of file NodeAttributes.cpp.

template<unsigned SPACE_DIM>

double NodeAttributes< SPACE_DIM >::GetRadius ( )

Return the radius associated with the Node

Returns: mRadius

Definition at line 155 of file NodeAttributes.cpp.

template<unsigned SPACE_DIM>

unsigned NodeAttributes< SPACE_DIM >::GetRegion ( )

Get the region ID

Returns: mRegion

Definition at line 66 of file NodeAttributes.cpp.

template<unsigned SPACE_DIM>

bool NodeAttributes< SPACE_DIM >::IsParticle ( )

Get whether this node is a particle, or not.

Returns: mIsParticle

Definition at line 143 of file NodeAttributes.cpp.

template<unsigned SPACE_DIM>

bool NodeAttributes< SPACE_DIM >::NeighboursIsEmpty ( )

Check whether the node neighbours collection is empty.

Returns: whether this node has any neighbours.

Definition at line 118 of file NodeAttributes.cpp.

template<unsigned SPACE_DIM>

void NodeAttributes< SPACE_DIM >::RemoveDuplicateNeighbours ( )

Remove duplicates from the vector of node neighbour indices.

Definition at line 111 of file NodeAttributes.cpp.

template<unsigned SPACE_DIM>

c_vector< double, SPACE_DIM > & NodeAttributes< SPACE_DIM >::rGetAppliedForce ( )

Get the current value of the applied force on the node.

Returns: mAppliedForce

Definition at line 78 of file NodeAttributes.cpp.

template<unsigned SPACE_DIM>

std::vector< double > & NodeAttributes< SPACE_DIM >::rGetAttributes ( )

Returns: mAttributes

Definition at line 54 of file NodeAttributes.cpp.

template<unsigned SPACE_DIM>

std::vector< unsigned > & NodeAttributes< SPACE_DIM >::rGetNeighbours ( )

Returns: this node's vector of neighbour indices.

Definition at line 136 of file NodeAttributes.cpp.

template<unsigned SPACE_DIM>

template<class Archive >

void NodeAttributes< SPACE_DIM >::serialize	(	Archive &	archive,
		const unsigned int	version
	)

inlineprivate

Archive the member variables.

Parameters

archive	the archive
version	the current version of this class

Definition at line 82 of file NodeAttributes.hpp.

References NodeAttributes< SPACE_DIM >::mAppliedForce, NodeAttributes< SPACE_DIM >::mAttributes, NodeAttributes< SPACE_DIM >::mIsParticle, NodeAttributes< SPACE_DIM >::mNeighbourIndices, NodeAttributes< SPACE_DIM >::mNeighboursSetUp, NodeAttributes< SPACE_DIM >::mRadius, and NodeAttributes< SPACE_DIM >::mRegion.

template<unsigned SPACE_DIM>

void NodeAttributes< SPACE_DIM >::SetIsParticle ( bool isParticle )

Set the flag mIsParticle.

Parameters

isParticle whether this node is particle or not.

Definition at line 149 of file NodeAttributes.cpp.

template<unsigned SPACE_DIM>

void NodeAttributes< SPACE_DIM >::SetNeighboursSetUp ( bool flag )

Sets a flag to indicate that the neighbours of this node have/have not been updated.

Parameters

flag	whether the neighbours are set up or not

Definition at line 124 of file NodeAttributes.cpp.

template<unsigned SPACE_DIM>

void NodeAttributes< SPACE_DIM >::SetRadius ( double radius )

Set the value of the radius.

Parameters

radius the value to assign to mRadius. Must be >= 0.0

Definition at line 161 of file NodeAttributes.cpp.

References EXCEPTION.

template<unsigned SPACE_DIM>

void NodeAttributes< SPACE_DIM >::SetRegion ( unsigned region )

Set the region ID

Parameters

region the value to to assign to mRegion.

Definition at line 72 of file NodeAttributes.cpp.

Friends And Related Function Documentation

template<unsigned SPACE_DIM>

friend class boost::serialization::access

friend

Needed for serialization.

Definition at line 73 of file NodeAttributes.hpp.

Member Data Documentation

template<unsigned SPACE_DIM>

c_vector<double, SPACE_DIM> NodeAttributes< SPACE_DIM >::mAppliedForce

private

For mutable nodes in OffLatticeSimulations, a container for the force accumulated on this node.

Definition at line 58 of file NodeAttributes.hpp.

Referenced by NodeAttributes< SPACE_DIM >::serialize().

template<unsigned SPACE_DIM>

std::vector<double> NodeAttributes< SPACE_DIM >::mAttributes

private

Arbitrary attributes that a user gives meaning to

Definition at line 52 of file NodeAttributes.hpp.

Referenced by NodeAttributes< SPACE_DIM >::serialize().

template<unsigned SPACE_DIM>

bool NodeAttributes< SPACE_DIM >::mIsParticle

private

Whether the node represents a particle or not: Used for NodeBasedCellPopulationWithParticles

Definition at line 70 of file NodeAttributes.hpp.

Referenced by NodeAttributes< SPACE_DIM >::serialize().

template<unsigned SPACE_DIM>

std::vector<unsigned> NodeAttributes< SPACE_DIM >::mNeighbourIndices

private

Vector of indices corresponding to neighbouring nodes.

Definition at line 64 of file NodeAttributes.hpp.

Referenced by NodeAttributes< SPACE_DIM >::serialize().

template<unsigned SPACE_DIM>

bool NodeAttributes< SPACE_DIM >::mNeighboursSetUp

private

A bool indicating whether the neighbours of this node have been calculated yet.

Definition at line 67 of file NodeAttributes.hpp.

Referenced by NodeAttributes< SPACE_DIM >::serialize().

template<unsigned SPACE_DIM>

double NodeAttributes< SPACE_DIM >::mRadius

private

The radius associated with the Node

Definition at line 61 of file NodeAttributes.hpp.

Referenced by NodeAttributes< SPACE_DIM >::serialize().

template<unsigned SPACE_DIM>

unsigned NodeAttributes< SPACE_DIM >::mRegion

private

The ID of the region of mesh in which the Node lies

Definition at line 55 of file NodeAttributes.hpp.

Referenced by NodeAttributes< SPACE_DIM >::serialize().

The documentation for this class was generated from the following files:

mesh/src/common/NodeAttributes.hpp
mesh/src/common/NodeAttributes.cpp

Public Member Functions

Private Member Functions

Private Attributes

Friends

Detailed Description

template<unsigned SPACE_DIM> class NodeAttributes< SPACE_DIM >

Constructor & Destructor Documentation

Member Function Documentation

Friends And Related Function Documentation

Member Data Documentation

template<unsigned SPACE_DIM>
class NodeAttributes< SPACE_DIM >