Chaste  Release::2018.1
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PCBlockDiagonal Class Reference

#include <PCBlockDiagonal.hpp>

+ Collaboration diagram for PCBlockDiagonal:

Classes

struct  PCBlockDiagonalContext
 

Public Member Functions

 PCBlockDiagonal (KSP &rKspObject)
 

Public Attributes

PCBlockDiagonalContext mPCContext
 
PC mPetscPCObject
 

Private Member Functions

void PCBlockDiagonalCreate (KSP &rKspObject)
 
void PCBlockDiagonalSetUp ()
 

Detailed Description

This class defines a PETSc-compliant purpouse-build preconditioner.

Let A be a matrix arising in the FEM discretisation of the bidomain equations with the following block structure:

A = (A11 B') (B A22)

By creating an instance of this class, one will define the following preconditioner:

inv(M) = inv( (A11 0) = (inv(A11) 0) (0 A22) ) (0 inv(A22))

The inverses are approximate with one cycle of AMG.

Note: This class requires PETSc to be build including HYPRE library. If it's not available, it will show the following warning: Chaste warning: in file linalg/src/PCLDUFactorisation.cpp at line ???: PETSc HYPRE preconditioning library is not installed and will approximate the inverse of the subblocks with PETSc's default preconditioner (bjacobi at the time of writing this).

Definition at line 85 of file PCBlockDiagonal.hpp.

Constructor & Destructor Documentation

PCBlockDiagonal::PCBlockDiagonal ( KSP &  rKspObject)

Constructor.

Parameters
rKspObjectKSP object where we want to install the block diagonal preconditioner.

Definition at line 47 of file PCBlockDiagonal.cpp.

References mPCContext, PCBlockDiagonalCreate(), and PCBlockDiagonalSetUp().

Member Function Documentation

void PCBlockDiagonal::PCBlockDiagonalCreate ( KSP &  rKspObject)
private

Creates all the state data required by the preconditioner.

Parameters
rKspObjectKSP object where we want to install the block diagonal preconditioner.

Definition at line 89 of file PCBlockDiagonal.cpp.

References PCBlockDiagonal::PCBlockDiagonalContext::A11_matrix_subblock, PCBlockDiagonal::PCBlockDiagonalContext::A11_scatter_ctx, PCBlockDiagonal::PCBlockDiagonalContext::A22_matrix_subblock, PCBlockDiagonal::PCBlockDiagonalContext::A22_scatter_ctx, PetscTools::CreateVec(), PetscTools::Destroy(), mPCContext, mPetscPCObject, PETSC_DESTROY_PARAM, PetscVecTools::SetupInterleavedVectorScatterGather(), TERMINATE, PCBlockDiagonal::PCBlockDiagonalContext::x1_subvector, PCBlockDiagonal::PCBlockDiagonalContext::x2_subvector, PCBlockDiagonal::PCBlockDiagonalContext::y1_subvector, and PCBlockDiagonal::PCBlockDiagonalContext::y2_subvector.

Referenced by PCBlockDiagonal().

void PCBlockDiagonal::PCBlockDiagonalSetUp ( )
private

Setups preconditioner.

Definition at line 198 of file PCBlockDiagonal.cpp.

References PCBlockDiagonal::PCBlockDiagonalContext::A11_matrix_subblock, PCBlockDiagonal::PCBlockDiagonalContext::A22_matrix_subblock, mPCContext, PCBlockDiagonal::PCBlockDiagonalContext::PC_amg_A11, PCBlockDiagonal::PCBlockDiagonalContext::PC_amg_A22, and PetscTools::SetOption().

Referenced by PCBlockDiagonal().

Member Data Documentation

PCBlockDiagonalContext PCBlockDiagonal::mPCContext

PC context, this will be passed to PCBlockDiagonalApply when PETSc returns control to our preconditioner subroutine. See PCShellSetContext().

Definition at line 112 of file PCBlockDiagonal.hpp.

Referenced by PCBlockDiagonal(), PCBlockDiagonalCreate(), and PCBlockDiagonalSetUp().

PC PCBlockDiagonal::mPetscPCObject

Generic PETSc preconditioner object

Definition at line 113 of file PCBlockDiagonal.hpp.

Referenced by PCBlockDiagonalCreate().

The documentation for this class was generated from the following files: